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      Directed self‐immobilization of alkaline phosphatase on micro‐patterned substrates via genetically fused metal‐binding peptide

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          Abstract

          Current biotechnological applications such as biosensors, protein arrays, and microchips require oriented immobilization of enzymes. The characteristics of recognition, self‐assembly and ease of genetic manipulation make inorganic binding peptides an ideal molecular tool for site‐specific enzyme immobilization. Herein, we demonstrate the utilization of gold binding peptide (GBP1) as a molecular linker genetically fused to alkaline phosphatase (AP) and immobilized on gold substrate. Multiple tandem repeats ( n = 5, 6, 7, 9) of gold binding peptide were fused to N‐terminus of AP (nGBP1‐AP) and the enzymes were expressed in E. coli cells. The binding and enzymatic activities of the bi‐functional fusion constructs were analyzed using quartz crystal microbalance spectroscopy and biochemical assays. Among the multiple‐repeat constructs, 5GBP1‐AP displayed the best bi‐functional activity and, therefore, was chosen for self‐immobilization studies. Adsorption and assembly properties of the fusion enzyme, 5GBP1‐AP, were studied via surface plasmon resonance spectroscopy and atomic force microscopy. We demonstrated self‐immobilization of the bi‐functional enzyme on micro‐patterned substrates where genetically linked 5GBP1‐AP displayed higher enzymatic activity per area compared to that of AP. Our results demonstrate the promising use of inorganic binding peptides as site‐specific molecular linkers for oriented enzyme immobilization with retained activity. Directed assembly of proteins on solids using genetically fused specific inorganic‐binding peptides has a potential utility in a wide range of biosensing and bioconversion processes. Biotechnol. Bioeng. 2009;103: 696–705. © 2009 Wiley Periodicals, Inc.

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          Most cited references53

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          Molecular biomimetics: nanotechnology through biology.

          Proteins, through their unique and specific interactions with other macromolecules and inorganics, control structures and functions of all biological hard and soft tissues in organisms. Molecular biomimetics is an emerging field in which hybrid technologies are developed by using the tools of molecular biology and nanotechnology. Taking lessons from biology, polypeptides can now be genetically engineered to specifically bind to selected inorganic compounds for applications in nano- and biotechnology. This review discusses combinatorial biological protocols, that is, bacterial cell surface and phage-display technologies, in the selection of short sequences that have affinity to (noble) metals, semiconducting oxides and other technological compounds. These genetically engineered proteins for inorganics (GEPIs) can be used in the assembly of functional nanostructures. Based on the three fundamental principles of molecular recognition, self-assembly and DNA manipulation, we highlight successful uses of GEPI in nanotechnology.
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            Selection of peptides with semiconductor binding specificity for directed nanocrystal assembly.

            In biological systems, organic molecules exert a remarkable level of control over the nucleation and mineral phase of inorganic materials such as calcium carbonate and silica, and over the assembly of crystallites and other nanoscale building blocks into complex structures required for biological function. This ability to direct the assembly of nanoscale components into controlled and sophisticated structures has motivated intense efforts to develop assembly methods that mimic or exploit the recognition capabilities and interactions found in biological systems. Of particular value would be methods that could be applied to materials with interesting electronic or optical properties, but natural evolution has not selected for interactions between biomolecules and such materials. However, peptides with limited selectivity for binding to metal surfaces and metal oxide surfaces have been successfully selected. Here we extend this approach and show that combinatorial phage-display libraries can be used to evolve peptides that bind to a range of semiconductor surfaces with high specificity, depending on the crystallographic orientation and composition of the structurally similar materials we have used. As electronic devices contain structurally related materials in close proximity, such peptides may find use for the controlled placement and assembly of a variety of practically important materials, thus broadening the scope for 'bottom-up' fabrication approaches.
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              Protein nanoarrays generated by dip-pen nanolithography.

              Dip-pen nanolithography was used to construct arrays of proteins with 100- to 350-nanometer features. These nanoarrays exhibit almost no detectable nonspecific binding of proteins to their passivated portions even in complex mixtures of proteins, and therefore provide the opportunity to study a variety of surface-mediated biological recognition processes. For example, reactions involving the protein features and antigens in complex solutions can be screened easily by atomic force microscopy. As further proof-of-concept, these arrays were used to study cellular adhesion at the submicrometer scale.
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                Author and article information

                Contributors
                candan@u.washington.edu , tamerler@itu.edu.tr
                Journal
                Biotechnol Bioeng
                Biotechnol. Bioeng
                10.1002/(ISSN)1097-0290
                BIT
                Biotechnology and Bioengineering
                Wiley Subscription Services, Inc., A Wiley Company (Hoboken )
                0006-3592
                1097-0290
                09 February 2009
                01 July 2009
                : 103
                : 4 ( doiID: 10.1002/bit.v103:4 )
                : 696-705
                Affiliations
                [ 1 ]Department of Materials Science and Engineering, University of Washington, Seattle, Washington 98195; telephone: 206‐543‐0724; fax: 206‐543‐3100
                [ 2 ]Molecular Biology and Genetics, Istanbul Technical University, Istanbul 34469, Turkey; telephone: +90‐212‐2857252; fax: +90‐212‐2856386;
                [ 3 ]Department of Chemistry, University of Washington, Seattle, Washington 98195
                [ 4 ]Department of Chemical Engineering, University of Washington, Seattle, Washington 98195
                Author notes
                [*] [* ]Department of Materials Science and Engineering, University of Washington, Seattle, Washington 98195; telephone: 206‐543‐0724; fax: 206‐543‐3100
                Article
                BIT22282
                10.1002/bit.22282
                7161797
                19309754
                c1ca3a96-a72e-4f7d-a315-f4fef3e1b0aa
                Copyright © 2009 Wiley Periodicals, Inc.

                This article is being made freely available through PubMed Central as part of the COVID-19 public health emergency response. It can be used for unrestricted research re-use and analysis in any form or by any means with acknowledgement of the original source, for the duration of the public health emergency.

                History
                : 27 October 2008
                : 26 January 2009
                : 02 February 2009
                Page count
                Figures: 6, Tables: 1, References: 59, Pages: 10, Words: 1425
                Categories
                Article
                Articles
                Biocatalysis, Protein Engineering, and Nanobiotechnology
                Custom metadata
                2.0
                1 July 2009
                Converter:WILEY_ML3GV2_TO_JATSPMC version:5.8.0 mode:remove_FC converted:15.04.2020

                Biotechnology
                inorganic binding peptides,enzymes,oriented‐immobilization,genetic fusion,self‐assembly

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