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      Characterisation of three fungal glucuronoyl esterases on glucuronic acid ester model compounds

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          Abstract

          The glucuronoyl esterases (GEs) that have been identified so far belong to family 15 of the carbohydrate esterases in the CAZy classification system and are presumed to target ester bonds between lignin alcohols and (4-O-methyl-) d-glucuronic acid residues of xylan. Few GEs have been cloned, expressed and characterised to date. Characterisation has been done on a variety of synthetic substrates; however, the number of commercially available substrates is very limited. We identified novel putative GEs from a wide taxonomic range of fungi and expressed the enzymes originating from Acremonium alcalophilum and Wolfiporia cocos as well as the previously described PcGE1 from Phanerochaete chrysosporium. All three fungal GEs were active on the commercially available compounds benzyl glucuronic acid (BnGlcA), allyl glucuronic acid (allylGlcA) and to a lower degree on methyl glucuronic acid (MeGlcA). The enzymes showed pH stability over a wide pH range and tolerated 6-h incubations of up to 50 °C. Kinetic parameters were determined for BnGlcA. This study shows the suitability of the commercially available model compounds BnGlcA, MeGlcA and allylGlcA in GE activity screening and characterisation experiments. We enriched the spectrum of characterised GEs with two new members of a relatively young enzyme family. Due to its biotechnological significance, this family deserves to be more extensively studied. The presented enzymes are promising candidates as auxiliary enzymes to improve saccharification of plant biomass.

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          The online version of this article (doi:10.1007/s00253-017-8266-9) contains supplementary material, which is available to authorized users.

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          Proteomic analysis of post-translational modifications.

          Post-translational modifications modulate the activity of most eukaryote proteins. Analysis of these modifications presents formidable challenges but their determination generates indispensable insight into biological function. Strategies developed to characterize individual proteins are now systematically applied to protein populations. The combination of function- or structure-based purification of modified 'subproteomes', such as phosphorylated proteins or modified membrane proteins, with mass spectrometry is proving particularly successful. To map modification sites in molecular detail, novel mass spectrometric peptide sequencing and analysis technologies hold tremendous potential. Finally, stable isotope labeling strategies in combination with mass spectrometry have been applied successfully to study the dynamics of modifications.
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            Genome sequence of the lignocellulose degrading fungus Phanerochaete chrysosporium strain RP78.

            White rot fungi efficiently degrade lignin, a complex aromatic polymer in wood that is among the most abundant natural materials on earth. These fungi use extracellular oxidative enzymes that are also able to transform related aromatic compounds found in explosive contaminants, pesticides and toxic waste. We have sequenced the 30-million base-pair genome of Phanerochaete chrysosporium strain RP78 using a whole genome shotgun approach. The P. chrysosporium genome reveals an impressive array of genes encoding secreted oxidases, peroxidases and hydrolytic enzymes that cooperate in wood decay. Analysis of the genome data will enhance our understanding of lignocellulose degradation, a pivotal process in the global carbon cycle, and provide a framework for further development of bioprocesses for biomass utilization, organopollutant degradation and fiber bleaching. This genome provides a high quality draft sequence of a basidiomycete, a major fungal phylum that includes important plant and animal pathogens.
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              Genome sequence of the model mushroom Schizophyllum commune.

              Much remains to be learned about the biology of mushroom-forming fungi, which are an important source of food, secondary metabolites and industrial enzymes. The wood-degrading fungus Schizophyllum commune is both a genetically tractable model for studying mushroom development and a likely source of enzymes capable of efficient degradation of lignocellulosic biomass. Comparative analyses of its 38.5-megabase genome, which encodes 13,210 predicted genes, reveal the species's unique wood-degrading machinery. One-third of the 471 genes predicted to encode transcription factors are differentially expressed during sexual development of S. commune. Whereas inactivation of one of these, fst4, prevented mushroom formation, inactivation of another, fst3, resulted in more, albeit smaller, mushrooms than in the wild-type fungus. Antisense transcripts may also have a role in the formation of fruiting bodies. Better insight into the mechanisms underlying mushroom formation should affect commercial production of mushrooms and their industrial use for producing enzymes and pharmaceuticals.
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                Author and article information

                Contributors
                46-(0)31-772-1000 , lisbeth.olsson@chalmers.se
                Journal
                Appl Microbiol Biotechnol
                Appl. Microbiol. Biotechnol
                Applied Microbiology and Biotechnology
                Springer Berlin Heidelberg (Berlin/Heidelberg )
                0175-7598
                1432-0614
                20 April 2017
                20 April 2017
                2017
                : 101
                : 13
                : 5301-5311
                Affiliations
                [1 ]ISNI 0000 0001 0775 6028, GRID grid.5371.0, Division of Industrial Biotechnology, Department of Biology and Biological Engineering, , Chalmers University of Technology, ; SE-412 96 Gothenburg, Sweden
                [2 ]ISNI 0000 0001 0775 6028, GRID grid.5371.0, Wallenberg Wood Science Center, , Chalmers University of Technology, ; SE-412 96 Gothenburg, Sweden
                [3 ]ISNI 0000000120346234, GRID grid.5477.1, Fungal Physiology, CBS-KNAW Fungal Biodiversity Centre & Fungal Molecular Physiology, , Utrecht University, ; 3584 CT Utrecht, The Netherlands
                Author information
                http://orcid.org/0000-0002-0827-5442
                Article
                8266
                10.1007/s00253-017-8266-9
                5486812
                28429057
                cdbe4f91-200c-4101-99a5-d3c9aa49cdef
                © The Author(s) 2017

                Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made.

                History
                : 9 January 2017
                : 12 March 2017
                : 27 March 2017
                Funding
                Funded by: FundRef http://dx.doi.org/10.13039/501100004063, Knut och Alice Wallenbergs Stiftelse;
                Funded by: FundRef http://dx.doi.org/10.13039/501100004963, Seventh Framework Programme;
                Award ID: 613868
                Categories
                Biotechnologically Relevant Enzymes and Proteins
                Custom metadata
                © Springer-Verlag GmbH Germany 2017

                Biotechnology
                carbohydrate esterase,benzyl glucuronic acid,allyl glucuronic acid,methyl glucuronic acid,lignin-carbohydrate complexes,cazymes

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