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      Comparative phylogeography of amphibians and reptiles in Algeria suggests common causes for the east-west phylogeographic breaks in the Maghreb

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          Abstract

          A series of phylogeographic studies in the Maghreb identified a repeated pattern of deep genetic divergence between an eastern (Tunisia) and western (Morocco) lineage for several taxa but lack of sampling in Algeria made it difficult to know if the range limits between the eastern and western lineages were shared among taxa or not. To address this question, we designed a comparative phylogeographic study using 8 reptile and 3 amphibian species with wide distribution in the Maghreb as models. We selected species where previous studies had identified an East-West phylogeographic divide and collected sampled in Algeria to 1) examine whether the simple East-West divergence pattern still holds after filling the sampling gap in Algeria or if more complex diversity patterns emerge; 2) if the E-W pattern still holds, test whether the limits between the E and W clades are shared between species, suggesting that common historical process caused the E-W divergences; 3) if E-W limits are shared between species, use information on the age of the divergence to identify possible geological or climatic events that could have triggered these E-W differentiations. We found that the E-W pattern was generally maintained after additional sampling in Algeria and identified two common disjunction areas, one around the Algeria-Morocco border, the other one in Kabylia (central Algeria), suggesting that common historical mechanisms caused the E-W divergences in the Maghreb. Our estimates for the times to most common recent ancestors to the E and W clades span a wide range between the Messinian salinity crisis and the Plio-Pleistocene limit (except for one older split), suggesting different origins for the initial divergences and subsequent preservation of the E and W lineages in common climatic refugia in the west and the east of the Maghreb.

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          DnaSP, DNA polymorphism analyses by the coalescent and other methods.

          DnaSP is a software package for the analysis of DNA polymorphism data. Present version introduces several new modules and features which, among other options allow: (1) handling big data sets (approximately 5 Mb per sequence); (2) conducting a large number of coalescent-based tests by Monte Carlo computer simulations; (3) extensive analyses of the genetic differentiation and gene flow among populations; (4) analysing the evolutionary pattern of preferred and unpreferred codons; (5) generating graphical outputs for an easy visualization of results. The software package, including complete documentation and examples, is freely available to academic users from: http://www.ub.es/dnasp
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            PHYML Online—a web server for fast maximum likelihood-based phylogenetic inference

            PHYML Online is a web interface to PHYML, a software that implements a fast and accurate heuristic for estimating maximum likelihood phylogenies from DNA and protein sequences. This tool provides the user with a number of options, e.g. nonparametric bootstrap and estimation of various evolutionary parameters, in order to perform comprehensive phylogenetic analyses on large datasets in reasonable computing time. The server and its documentation are available at .
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              • Record: found
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              Glacial refugia influence plant diversity patterns in the Mediterranean Basin

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                Author and article information

                Contributors
                Role: ConceptualizationRole: Data curationRole: Formal analysisRole: InvestigationRole: MethodologyRole: SoftwareRole: Writing – original draftRole: Writing – review & editing
                Role: Formal analysisRole: Software
                Role: Data curation
                Role: Data curation
                Role: Data curation
                Role: Data curation
                Role: Conceptualization
                Role: ConceptualizationRole: Data curation
                Role: Data curation
                Role: ConceptualizationRole: Data curationRole: Funding acquisitionRole: Project administrationRole: ResourcesRole: Supervision
                Role: ConceptualizationRole: Data curationRole: Funding acquisitionRole: InvestigationRole: MethodologyRole: Project administrationRole: ResourcesRole: SupervisionRole: ValidationRole: VisualizationRole: Writing – original draftRole: Writing – review & editing
                Role: Editor
                Journal
                PLoS One
                PLoS ONE
                plos
                plosone
                PLoS ONE
                Public Library of Science (San Francisco, CA USA )
                1932-6203
                29 August 2018
                2018
                : 13
                : 8
                : e0201218
                Affiliations
                [1 ] CEFE, CNRS, Univ. Montpellier, Univ Paul Valéry Montpellier 3, INRA, EPHE, IRD, Montpellier, France
                [2 ] Naturalia Environnement, Site Agroparc, Avignon, France
                [3 ] Unité de recherche de biodiversité et biologie des populations, Faculté des sciences de Tunis, Université de Tunis Elmanar, Tunis, Tunisie
                [4 ] Département de l’Environnement, Faculté des Sciences, Université Djillali Liabes, Sidi Bel Abbes, Algérie
                [5 ] Département des Sciences Agronomiques, Faculté des Sciences de la Nature et de la Vie, Université Chadli Bendjedid, El Tarf, Algérie
                State Museum of Natural History, GERMANY
                Author notes

                Competing Interests: The authors have declared that no competing interests exist.

                Author information
                http://orcid.org/0000-0001-9246-730X
                Article
                PONE-D-17-35722
                10.1371/journal.pone.0201218
                6114291
                30157236
                cdf18e8e-0b47-41f1-9778-ac03c716b73b
                © 2018 Beddek et al

                This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                : 9 October 2017
                : 11 July 2018
                Page count
                Figures: 14, Tables: 3, Pages: 26
                Funding
                Menad BEDDEK received a Ph.D grant from Naturalia-Environnement/ANRT CIFRE convention N° 2013/0145. Naturalia Environnement: http://www.naturalia-environnement.fr/; ANRT CIFRE: http://www.anrt.asso.fr/fr/cifre-7843. The funder "Naturalia Environnement" reprsented by Olivier Peyre has participated to the study design and manuscript preparation.
                Categories
                Research Article
                Biology and Life Sciences
                Biogeography
                Phylogeography
                Ecology and Environmental Sciences
                Biogeography
                Phylogeography
                Earth Sciences
                Geography
                Biogeography
                Phylogeography
                Biology and Life Sciences
                Evolutionary Biology
                Population Genetics
                Phylogeography
                Biology and Life Sciences
                Genetics
                Population Genetics
                Phylogeography
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                Population Biology
                Population Genetics
                Phylogeography
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                Evolutionary Biology
                Evolutionary Systematics
                Phylogenetics
                Phylogenetic Analysis
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                Taxonomy
                Evolutionary Systematics
                Phylogenetics
                Phylogenetic Analysis
                Computer and Information Sciences
                Data Management
                Taxonomy
                Evolutionary Systematics
                Phylogenetics
                Phylogenetic Analysis
                People and Places
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                Africa
                Algeria
                Biology and Life Sciences
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                Ecological Metrics
                Species Diversity
                Ecology and Environmental Sciences
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                Ecological Metrics
                Species Diversity
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                Genetics
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                Custom metadata
                All the genetic sequences produced for this paper are available on GenBank with accession numbers available in the Supporting Information files.

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