Neutralisation sensitivity of SARS-CoV-2 omicron subvariants to therapeutic monoclonal antibodies

Abstract

During the current pandemic, SARS-CoV-2 has considerably diversified. The omicron variant (B.1.1.529) was identified at the end of November, 2021, and rapidly spread worldwide. As of May, 2022, the omicron BA.2 subvariant is the most dominant variant in the world. Other omicron subvariants have since emerged and some of them have begun to outcompete BA.2 in multiple countries. For instance, omicron BA.2.11 subvariant is spreading in France, and the BA.2.12.1 and BA.4/5 subvariants are becoming dominant in the USA and South Africa, respectively (appendix pp 4–5). Newly emerging SARS-CoV-2 variants need to be carefully monitored for a potential increase in transmission rate, pathogenicity, and resistance to immune responses. The resistance of variants to vaccines and therapeutic antibodies can be attributed to a variety of mutations in the viral spike protein. Although the spike proteins of new omicron subvariants (BA.2.11, BA.2.12.1, and BA.4/5) are derived from the BA.2 spike protein, the majority of them additionally bear the following mutations in the spike: BA.2.11, L452R; BA.2.12.1, L452Q and S704L; and BA.4/5, L452R, HV69-70del, F486V, and R493Q (appendix pp 4–5). In particular, the L452R and L452Q substitutions were detected in the delta (B.1.617.2) and lambda (C.37) variants, respectively, and we demonstrated that the L452R/Q substitution affects sensitivity to vaccine-induced neutralising antibodies.1, 2 Therefore, it is reasonable to assume that these new omicron subvariants have reduced sensitivity to therapeutic monoclonal antibodies. To address this possibility, we generated pseudoviruses harbouring the spike proteins of these omicron subvariants and derivatives and prepared eight therapeutic monoclonal antibodies (appendix pp 2–3). Consistent with previous studies,3, 4, 5 bamlanivimab, casirivimab, etesevimab, imdevimab, and tixagevimab were less functional against BA.2 than the parental virus (table ). These five antibodies were also less functional against new omicron subvariants, whereas the BA.2 spike bearing the R493Q substitution was partially sensitive to casirivimab and tixagevimab (table; appendix pp 4–5). Bebtelovimab was approximately 2-fold more effective against BA.2 and all omicron subvariants tested than the parental virus (table). Although sotrovimab was roughly 20-fold less effective against BA.2 than the parental virus, the omicron subvariants bearing the L452R substitution, including BA.2.11 and BA.4/5, were more sensitive to sotrovimab than BA.2 (table). Evusheld (cilgavimab and tixagevimab), particularly cilgavimab, was effective against BA.2, whereas the L452R/Q substitution rendered approximately 2–5-fold resistance. Notably, BA.4/5 exhibited about 20-fold more resistance to cilgavimab and Evusheld than BA.2 (table). Recently, Cao and colleagues showed that the neutralising activity of cilgavimab against BA.4/5 is approximately 4-fold lower than that against BA.2. 6 Here, we used lentivirus-based pseudoviruses, whereas Cao and colleagues used vesicular stomatitis virus-based pseudoviruses. 6 Therefore, the disparity between our results and those of Cao and colleagues might be due to the difference in the type of pseudoviruses used in the neutralisation assay. Table 50% neutralisation concentration (ng/mL) Bamlanivimab Bebtelovimab Casirivimab Cilgavimab Etesevimab Imdevimab Sotrovimab Tixagevimab Casirivimab plus imdevimab (Ronapreve) Etesevimab plus bamlanivimab Cilgavimab plus tixagevimab (Evusheld) B.1.1 (parental) 12·8 8·1 9·9 21 12 79 94 6·7 6·2 6·7 4·1 BA.2 >3700 3·8 >50 417 19 >6050 >50 000 2190 >2750 >2400 >3700 33 BA.2.11 >3700 2·3 >50 417 71 >6050 >50 000 540 >2750 >2400 >3700 154 BA.2.12.1 >3700 5·5 >50 417 75 >6050 >50 000 629 >2750 >2400 >3700 135 BA.4/5 >3700 6·3 >50 417 443 >6050 >50 000 1261 >2750 >2400 >3700 609 BA.2 L452Q >3700 5·0 >50 417 26 >6050 >50 000 2443 >2750 >2400 >3700 82 BA.2 S704L >3700 1·1 >50 417 28 >6050 >50 000 1213 >2750 >2400 >3700 27 BA.2 HV69-70del >3700 2·2 >50 417 19 >6050 >50 000 774 >2750 >2400 >3700 34 BA.2 F486V >3700 1·1 >50 417 18 >6050 >50 000 1575 >2750 >2400 >3700 23 BA.2 R493Q >3700 4·2 3697 22 >6050 >50 000 1791 101 431 >3700 31 Representative neutralisation curves are shown in appendix pp 4–5. Since mutations are accumulated in the spike proteins of newly emerging SARS-CoV-2 variants, we suggest the importance of rapid evaluation of the efficiency of therapeutic monoclonal antibodies against novel SARS-CoV-2 variants. We declare no competing interests. DY, YK, and IK contributed equally. This work was supported in part by the Japan Agency for Medical Research and Development (AMED) Research Program on Emerging and Re-emerging Infectious Diseases (JP22fk0108146 to KS, JP20fk0108413 to KS, and JP20fk0108451 to G2P-Japan Consortium and KS), the AMED Research Program on HIV/AIDS (JP22fk0410039 to KS), the Japan Science and Technology Agency CREST programme (JPMJCR20H4 to KS), the Japan Society for the Promotion of Science (JSPS) Fund for the Promotion of Joint International Research (Fostering Joint International Research; 18KK0447 to KS), the JSPS Core-to-Core Program JPJSCCA20190008 (A. Advanced Research Networks; to KS), the JSPS Research Fellow DC2 22J11578 (to KU), and The Tokyo Biochemical Research Foundation (to KS).