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      DNA → RNA: What Do Students Think the Arrow Means?

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          Abstract

          The authors investigated student understanding of central dogma concepts in a variety of settings. They found that students are not primed to think about “information” when presented with the canonical figure of the central dogma and uncovered interesting conceptual misunderstandings about the meaning of the arrows in the representation.

          Abstract

          The central dogma of molecular biology, a model that has remained intact for decades, describes the transfer of genetic information from DNA to protein though an RNA intermediate. While recent work has illustrated many exceptions to the central dogma, it is still a common model used to describe and study the relationship between genes and protein products. We investigated understanding of central dogma concepts and found that students are not primed to think about information when presented with the canonical figure of the central dogma. We also uncovered conceptual errors in student interpretation of the meaning of the transcription arrow in the central dogma representation; 36% of students ( n = 128; all undergraduate levels) described transcription as a chemical conversion of DNA into RNA or suggested that RNA existed before the process of transcription began. Interviews confirm that students with weak conceptual understanding of information flow find inappropriate meaning in the canonical representation of central dogma. Therefore, we suggest that use of this representation during instruction can be counterproductive unless educators are explicit about the underlying meaning.

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          Central dogma of molecular biology.

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            What is a gene, post-ENCODE? History and updated definition.

            While sequencing of the human genome surprised us with how many protein-coding genes there are, it did not fundamentally change our perspective on what a gene is. In contrast, the complex patterns of dispersed regulation and pervasive transcription uncovered by the ENCODE project, together with non-genic conservation and the abundance of noncoding RNA genes, have challenged the notion of the gene. To illustrate this, we review the evolution of operational definitions of a gene over the past century--from the abstract elements of heredity of Mendel and Morgan to the present-day ORFs enumerated in the sequence databanks. We then summarize the current ENCODE findings and provide a computational metaphor for the complexity. Finally, we propose a tentative update to the definition of a gene: A gene is a union of genomic sequences encoding a coherent set of potentially overlapping functional products. Our definition side-steps the complexities of regulation and transcription by removing the former altogether from the definition and arguing that final, functional gene products (rather than intermediate transcripts) should be used to group together entities associated with a single gene. It also manifests how integral the concept of biological function is in defining genes.
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              The Genetics Concept Assessment: a new concept inventory for gauging student understanding of genetics.

              We have designed, developed, and validated a 25-question Genetics Concept Assessment (GCA) to test achievement of nine broad learning goals in majors and nonmajors undergraduate genetics courses. Written in everyday language with minimal jargon, the GCA is intended for use as a pre- and posttest to measure student learning gains. The assessment was reviewed by genetics experts, validated by student interviews, and taken by >600 students at three institutions. Normalized learning gains on the GCA were positively correlated with averaged exam scores, suggesting that the GCA measures understanding of topics relevant to instructors. Statistical analysis of our results shows that differences in the item difficulty and item discrimination index values between different questions on pre- and posttests can be used to distinguish between concepts that are well or poorly learned during a course.
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                Author and article information

                Contributors
                Role: Monitoring Editor
                Journal
                CBE Life Sci Educ
                CBE-LSE
                CBE-LSE
                CBE-LSE
                CBE Life Sciences Education
                American Society for Cell Biology
                1931-7913
                1931-7913
                Summer 2014
                : 13
                : 2
                : 338-348
                Affiliations
                Rochester Institute of Technology, Rochester, NY 14623
                Author notes
                Address correspondence to: L. Kate Wright ( lkwsbi@ 123456rit.edu ).
                Article
                CBE-13-09-0188
                10.1187/cbe.CBE-13-09-0188
                4041510
                26086664
                d93ee281-c30d-42d1-93ff-ccf1b251cc4d
                © 2014 L. K. Wright et al. CBE—Life Sciences Education © 2014 The American Society for Cell Biology. This article is distributed by The American Society for Cell Biology under license from the author(s). It is available to the public under an Attribution–Noncommercial–Share Alike 3.0 Unported Creative Commons License ( http://creativecommons.org/licenses/by-nc-sa/3.0).

                “ASCB®” and “The American Society for Cell Biology®” are registered trademarks of The American Society of Cell Biology.

                History
                : 19 September 2013
                : 18 March 2014
                : 20 March 2014
                Categories
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                June 2, 2014

                Education
                Education

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