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      Human cytomegalovirus blocks canonical TGFβ signaling during lytic infection to limit induction of type I interferons

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          Abstract

          Human cytomegalovirus (HCMV) microRNAs (miRNAs) significantly rewire host signaling pathways to support the viral lifecycle and regulate host cell responses. Here we show that SMAD3 expression is regulated by HCMV miR-UL22A and contributes to the IRF7-mediated induction of type I IFNs and IFN-stimulated genes (ISGs) in human fibroblasts. Addition of exogenous TGFβ interferes with the replication of a miR-UL22A mutant virus in a SMAD3-dependent manner in wild type fibroblasts, but not in cells lacking IRF7, indicating that downregulation of SMAD3 expression to limit IFN induction is important for efficient lytic replication. These findings uncover a novel interplay between SMAD3 and innate immunity during HCMV infection and highlight the role of viral miRNAs in modulating these responses.

          Author summary

          Cells trigger the interferon (IFN) response to induce the expression of cellular genes that limit virus replication. In turn, viruses have evolved numerous countermeasures to avoid the effects of IFN signaling. Using a microRNA (miRNA) mutant virus we have uncovered a novel means of regulating the IFN response during human cytomegalovirus (HCMV) infection. Lytic HCMV infection induces the production of TGFβ, which binds to the TGFβ receptor and activates the receptor-associated SMAD SMAD3. SMAD3, together with IRF7, induces the expression of IFNβ and downstream IFN-stimulated genes in human fibroblasts. To counteract this, HCMV miR-UL22A, along with other HCMV gene products, directly targets SMAD3 for downregulation. Infection of fibroblasts with a miR-UL22A mutant virus results in enhanced type I IFN production in a SMAD3- and IRF7-dependent manner and the virus is impaired for growth in the presence of TGFβ, but only when both SMAD3 and IRF7 are present, highlighting the unique interaction between TGFβ and innate immune signaling.

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          Most cited references71

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          Metazoan MicroRNAs

          MicroRNAs (miRNAs) are ∼22 nt RNAs that direct posttranscriptional repression of mRNA targets in diverse eukaryotic lineages. In humans and other mammals, these small RNAs help sculpt the expression of most mRNAs. This article reviews advances in our understanding of the defining features of metazoan miRNAs and their biogenesis, genomics, and evolution. It then reviews how metazoan miRNAs are regulated, how they recognize and cause repression of their targets, and the biological functions of this repression, with a compilation of knockout phenotypes that shows that important biological functions have been identified for most of the broadly conserved miRNAs of mammals.
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            Transforming Growth Factor-β Signaling in Immunity and Cancer

            Transforming growth factor (TGF)-β is a crucial enforcer of immune homeostasis and tolerance, inhibiting the expansion and function of many components of the immune system. Perturbations in TGF-β signaling underlie inflammatory diseases and promote tumor emergence. TGF-β is also central to immune suppression within the tumor microenvironment, and recent studies have revealed roles in tumor immune evasion and poor responses to cancer immunotherapy. Here, we present an overview of the complex biology of the TGF-β family and its context-dependent nature. Then, focusing on cancer, we discuss the roles of TGF-β signaling in distinct immune cell types and how this knowledge is being leveraged to unleash the immune system against the tumor.
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              IKKepsilon and TBK1 are essential components of the IRF3 signaling pathway.

              The transcription factors interferon regulatory factor 3 (IRF3) and NF-kappaB are required for the expression of many genes involved in the innate immune response. Viral infection, or the binding of double-stranded RNA to Toll-like receptor 3, results in the coordinate activation of IRF3 and NF-kappaB. Activation of IRF3 requires signal-dependent phosphorylation, but little is known about the signaling pathway or kinases involved. Here we report that the noncanonical IkappaB kinase homologs, IkappaB kinase-epsilon (IKKepsilon) and TANK-binding kinase-1 (TBK1), which were previously implicated in NF-kappaB activation, are also essential components of the IRF3 signaling pathway. Thus, IKKepsilon and TBK1 have a pivotal role in coordinating the activation of IRF3 and NF-kappaB in the innate immune response.
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                Author and article information

                Contributors
                Role: InvestigationRole: Writing – review & editing
                Role: Investigation
                Role: Resources
                Role: Resources
                Role: ConceptualizationRole: ResourcesRole: Writing – review & editing
                Role: ConceptualizationRole: Formal analysisRole: InvestigationRole: MethodologyRole: SupervisionRole: Writing – original draftRole: Writing – review & editing
                Role: Editor
                Journal
                PLoS Pathog
                PLoS Pathog
                plos
                PLoS Pathogens
                Public Library of Science (San Francisco, CA USA )
                1553-7366
                1553-7374
                19 August 2021
                August 2021
                : 17
                : 8
                : e1009380
                Affiliations
                [001] Vaccine and Gene Therapy Institute, Oregon Health and Science University, Beaverton, Oregon, United States of America
                Tulane Health Sciences Center, UNITED STATES
                Author notes

                The authors have declared that no competing interests exist.

                Author information
                https://orcid.org/0000-0002-9826-4826
                https://orcid.org/0000-0002-0323-2662
                https://orcid.org/0000-0003-2945-0147
                Article
                PPATHOGENS-D-21-00319
                10.1371/journal.ppat.1009380
                8407580
                34411201
                dd2d6e9b-783f-4e5d-881a-3c1bdabe4b16
                © 2021 Pham et al

                This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                : 11 March 2021
                : 3 August 2021
                Page count
                Figures: 8, Tables: 0, Pages: 20
                Funding
                Funded by: funder-id http://dx.doi.org/10.13039/100000060, national institute of allergy and infectious diseases;
                Award ID: P01 AI127335
                Award Recipient :
                Funded by: funder-id http://dx.doi.org/10.13039/100000060, national institute of allergy and infectious diseases;
                Award ID: P01 AI127335
                Award Recipient :
                Funded by: funder-id http://dx.doi.org/10.13039/100000060, national institute of allergy and infectious diseases;
                Award ID: R01 AI143660
                Award Recipient :
                Funded by: funder-id http://dx.doi.org/10.13039/100000060, national institute of allergy and infectious diseases;
                Award ID: P01 AI127335
                Award Recipient :
                Funded by: funder-id http://dx.doi.org/10.13039/100000060, national institute of allergy and infectious diseases;
                Award ID: R01 AI143660
                Award Recipient :
                Funded by: funder-id http://dx.doi.org/10.13039/100000060, National Institute of Allergy and Infectious Diseases;
                Award ID: R01 AI143660
                Award Recipient :
                A.H.P, J.M. and M.H.H are supported by National Institute of Health P01 AI127335 ( https://www.niaid.nih.gov/). S.B., K.M.P. and V.R.D are supported by National Institute of Health R01 AI143660 ( https://www.niaid.nih.gov/). The funders had no role in the study design, data collection and analysis, decision to publish, or preparation of the manuscript.
                Categories
                Research Article
                Biology and life sciences
                Cell biology
                Signal transduction
                Cell signaling
                Signaling cascades
                TGF-beta signaling cascade
                Biology and life sciences
                Cell biology
                Signal transduction
                Cell signaling
                SMAD signaling
                Biology and Life Sciences
                Biochemistry
                Proteins
                Interferons
                Biology and life sciences
                Genetics
                Gene expression
                Gene regulation
                Small interfering RNA
                Biology and life sciences
                Biochemistry
                Nucleic acids
                RNA
                Non-coding RNA
                Small interfering RNA
                Biology and Life Sciences
                Molecular Biology
                Molecular Biology Techniques
                Transfection
                Research and Analysis Methods
                Molecular Biology Techniques
                Transfection
                Biology and Life Sciences
                Microbiology
                Virology
                Viral Replication
                Biology and life sciences
                Biochemistry
                Nucleic acids
                RNA
                Non-coding RNA
                Natural antisense transcripts
                MicroRNAs
                Biology and life sciences
                Genetics
                Gene expression
                Gene regulation
                MicroRNAs
                Biology and Life Sciences
                Cell Biology
                Cellular Types
                Animal Cells
                Connective Tissue Cells
                Fibroblasts
                Biology and Life Sciences
                Anatomy
                Biological Tissue
                Connective Tissue
                Connective Tissue Cells
                Fibroblasts
                Medicine and Health Sciences
                Anatomy
                Biological Tissue
                Connective Tissue
                Connective Tissue Cells
                Fibroblasts
                Custom metadata
                vor-update-to-uncorrected-proof
                2021-08-31
                All relevant data are within the manuscript and its files.

                Infectious disease & Microbiology
                Infectious disease & Microbiology

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