A capillary electrophoresis (CE) microsystem, based on the combination of microphotolithographically fabricated separation chips and thick-film electrochemical detector strips, is described. The microsystem consists of a planar screen-printed carbon line electrode mounted perpendicular to the flow direction. Such coupling obviates the need for permanent attachment of the detector, to allow easy and fast replacement of the working electrode. Variables influencing the separation efficiency and amperometric response, including the channel-electrode spacing, separation voltage, or detection potential, are assessed and optimized. The versatility, simplicity, and low-cost advantages of the new design are coupled to an attractive performance, with submicromolar detection limits, and good precision. Applicability for assays of mixtures of nitroaromatic explosives or catecholamines is demonstrated. Such use of screen-printed detectors should also benefit conventional CE systems, particularly in applications requiring a frequent replacement of the working electrode.