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      Deletion of a Yci1 Domain Protein of Candida albicans Allows Homothallic Mating in MTL Heterozygous Cells

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          ABSTRACT

          It has been proposed that the ancestral fungus was mating competent and homothallic. However, many mating-competent fungi were initially classified as asexual because their mating capacity was hidden behind layers of regulation. For efficient in vitro mating, the essentially obligate diploid ascomycete pathogen Candida albicans has to change its mating type locus from heterozygous MTL a/α to homozygous MTL a / a or MTLα/α and then undergo an environmentally controlled epigenetic switch to the mating-competent opaque form. These requirements greatly reduce the potential for C. albicans mating. Deletion of the Yci1 domain gene OFR1 bypasses the need for C. albicans cells to change the mating type locus from heterozygous to homozygous prior to switching to the opaque form and mating and allows homothallic mating of MTL heterozygous strains. This bypass is carbon source dependent and does not occur when cells are grown on glucose. Transcriptional profiling of ofr1 mutant cells shows that in addition to regulating cell type and mating circuitry, Ofr1 is needed for proper regulation of histone and chitin biosynthesis gene expression. It appears that OFR1 is a key regulator in C. albicans and functions in part to maintain the cryptic mating phenotype of the pathogen.

          IMPORTANCE

          Candida albicans is a human fungal pathogen with a recently discovered, highly cryptic mating ability. For efficient mating, it has to lose heterozygosity at its mating type locus. Then, MTL homozygous strains can undergo an epigenetic switch to an elongated yeast state, termed the opaque form, and become mating competent. This infrequent two-step process greatly reduces the potential for mating; few strains are MTL homozygous, and the opaque state is unstable at the temperature of the mammalian host. C. albicans has a complex mechanism for mating that appears designed to ensure that mating is infrequent. Here, we have characterized a new gene, opaque-formation regulator 1 ( OFR1). Deleting the OFR1 gene allows MTL a/α strains to mate efficiently with either mating type or even mate homothallically. It is possible that downregulating OFR1 in the host environment could allow mating in C. albicans by a route that does not involve MTL homozygosis.

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          Large-scale essential gene identification in Candida albicans and applications to antifungal drug discovery.

          Candida albicans is the primary fungal pathogen of humans. Despite the need for novel drugs to combat fungal infections [Sobel, J.D. (2000) Clin Infectious Dis 30: 652], antifungal drug discovery is currently limited by both the availability of suitable drug targets and assays to screen corresponding targets. A functional genomics approach based on the diploid C. albicans genome sequence, termed GRACETM (gene replacement and conditional expression), was used to assess gene essentiality through a combination of gene replacement and conditional gene expression. In a systematic application of this approach, we identify 567 essential genes in C. albicans. Interestingly, evaluating the conditional phenotype of all identifiable C. albicans homologues of the Saccharomyces cerevisiae essential gene set [Giaever, G., Chu, A.M., Ni, L., Connelly, C., Riles, L., Veronneau, S., et al. (2002) Nature 418: 387-391] by GRACE revealed only 61% to be essential in C. albicans, emphasizing the importance of performing such studies directly within the pathogen. Construction of this conditional mutant strain collection facilitates large-scale examination of terminal phenotypes of essential genes. This information enables preferred drug targets to be selected from the C. albicans essential gene set by phenotypic information derived both in vitro, such as cidal versus static terminal phenotypes, as well as in vivo through virulence studies using conditional strains in an animal model of infection. In addition, the combination of phenotypic and bioinformatic analyses further improves drug target selection from the C. albicans essential gene set, and their respective conditional mutant strains may be directly used as sensitive whole-cell assays for drug screening.
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            White-opaque switching in Candida albicans is controlled by mating-type locus homeodomain proteins and allows efficient mating.

            Discovered over a decade ago, white-opaque switching in the human fungal pathogen Candida albicans is an alternation between two quasistable, heritable transcriptional states. Here, we show that white-opaque switching and sexual mating are both controlled by mating type locus homeodomain proteins and that opaque cells mate approximately 10(6) times more efficiently than do white cells. These results show that opaque cells are a mating-competent form of C. albicans and that this pathogen undergoes a white-to-opaque switch as a critical step in the mating process. As white cells are generally more robust in a mammalian host than are opaque cells, this strategy allows the organism to survive the rigors of life within a mammalian host, yet generate mating-competent cells.
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              Passage through the mammalian gut triggers a phenotypic switch that promotes Candida albicans commensalism

              Among ~5,000,000 fungal species, 1 Candida albicans is exceptional in its lifelong association with humans, either within the gastrointestinal microbiome or as an invasive pathogen. 2 Opportunistic infections are generally ascribed to defective host immunity 3 but may require specific microbial programs. Here, we report that exposure of C. albicans to the mammalian gut triggers a developmental switch, driven by the Wor1 transcription factor, to a commensal cell type. Wor1 expression was previously observed only in rare genetic backgrounds, 4–6 where it controls a white-opaque switch for mating. 4–7 We show that passage of wild-type cells through the murine gastrointestinal tract triggers WOR1 expression and a novel phenotypic switch. The resulting GUT (Gastrointestinally-IndUced Transition) cells differ morphologically and functionally from previously defined cell types, including opaque, and express a transcriptome that is optimized for the digestive tract. The white-GUT switch illuminates how a microorganism utilizes distinct genetic programs to transition between commensalism and invasive pathogenesis.
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                Author and article information

                Journal
                mBio
                MBio
                mbio
                mbio
                mBio
                mBio
                American Society for Microbiology (1752 N St., N.W., Washington, DC )
                2150-7511
                26 April 2016
                Mar-Apr 2016
                : 7
                : 2
                : e00465-16
                Affiliations
                [a ]Biology Department, Concordia University, Montreal, Quebec, Canada
                [b ]Biotechnology Research Institute, National Research Council, Montreal, Quebec, Canada
                [c ]Department of Molecular Microbiology and Immunology, Brown University, Providence, Rhode Island, USA
                Author notes
                Address correspondence to Malcolm Whiteway, malcolm.whiteway@ 123456concordia.ca .

                Editor Judith Berman, University of Minnesota, GCD

                This article is a direct contribution from a Fellow of the American Academy of Microbiology. External solicited reviewers: Joachim Morschhäuser, Universität Würzburg; Beverly Errede, University of North Carolina.

                Article
                mBio00465-16
                10.1128/mBio.00465-16
                4850264
                27118591
                df0156e2-1094-42e8-aefe-4224dcf6bdab
                Copyright © 2016 Sun et al.

                This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license.

                History
                : 17 March 2016
                : 23 March 2016
                Page count
                supplementary-material: 9, Figures: 4, Tables: 4, Equations: 0, References: 47, Pages: 12, Words: 11798
                Funding
                Funded by: Merck Frosst
                Award Recipient : Malcolm Whiteway
                Funded by: HHS | National Institutes of Health (NIH) http://dx.doi.org/10.13039/100000002
                Award ID: AI081704
                Award ID: AI112362
                Award ID: F31DE023726
                Award Recipient : Matthew P. Hirakawa Award Recipient : Richard J Bennett
                Funded by: Burroughs Wellcome Fund (BWF) http://dx.doi.org/10.13039/100000861
                Award ID: PATH
                Award Recipient : Richard J Bennett
                Funded by: Canadian Institutes of Health Research (CIHR) http://dx.doi.org/10.13039/501100000024
                Award ID: MOP42516
                Award Recipient : Malcolm Whiteway
                Merck fund was provided by Merck Frosst to support basic research in Quebec.
                Categories
                Research Article
                Custom metadata
                March/April 2016

                Life sciences
                Life sciences

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