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      Advances in cytogenetics of Brazilian rodents: cytotaxonomy, chromosome evolution and new karyotypic data

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          Abstract

          Abstract

          Rodents constitute one of the most diversified mammalian orders. Due to the morphological similarity in many of the groups, their taxonomy is controversial. Karyotype information proved to be an important tool for distinguishing some species because some of them are species-specific. Additionally, rodents can be an excellent model for chromosome evolution studies since many rearrangements have been described in this group.This work brings a review of cytogenetic data of Brazilian rodents, with information about diploid and fundamental numbers, polymorphisms, and geographical distribution. We point out that, even with the recent efforts on cytogenetic studies in this group, many species lack karyotypic data. Moreover, we describe for the first time the karyotype of Carterodon sulcidens (Lund, 1838) (Family Echimyidae ), a new fundamental number for an undescribed species of Neacomys Thomas, 1900 (Family Cricetidae , Subfamily Sigmodontinae ), and illustrate the karyotype of a Brazilian specimen of Mus musculus Linnaeus, 1758 (Family Muridae ). This review compiles the cytogenetic data on Brazilian rodents reported in the last three decades, after the last revision published in 1984, including synonyms, chromosomal variations, and geographic distribution. Additionally, it also reinforces that Brazilian biodiversity is still poorly known, considering the new data reported here.

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          Chelex 100 as a medium for simple extraction of DNA for PCR-based typing from forensic material.

          Procedures utilizing Chelex 100 chelating resin have been developed for extracting DNA from forensic-type samples for use with the PCR. The procedures are simple, rapid, involve no organic solvents and do not require multiple tube transfers for most types of samples. The extraction of DNA from semen and very small bloodstains using Chelex 100 is as efficient or more efficient than using proteinase K and phenol-chloroform extraction. DNA extracted from bloodstains seems less prone to contain PCR inhibitors when prepared by this method. The Chelex method has been used with amplification and typing at the HLA DQ alpha locus to obtain the DQ alpha genotypes of many different types of samples, including whole blood, bloodstains, seminal stains, buccal swabs, hair and post-coital samples. The results of a concordance study are presented in which the DQ alpha genotypes of 84 samples prepared using Chelex or using conventional phenol-chloroform extraction are compared. The genotypes obtained using the two different extraction methods were identical for all samples tested.
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            Chromosomal speciation revisited: rearranging theory with pieces of evidence.

            The suggestion that chromosomal rearrangements play a role in speciation resulted from the observation that heterokaryotypes are often infertile. However, the first chromosomal speciation models were unsatisfactory and data available to test them was scarce. Recently, large amounts of data have become available and new theoretical models have been developed explaining how rearrangements facilitate speciation in the face of gene flow. Here, we re-examine theoretical predictions and revisit different sources of data. Although rearrangements are often associated with increased levels of divergence, unequivocal demonstration that their role in suppressing recombination results in speciation is often lacking. Finally, we question some previous predictions and suggest new empirical and theoretical approaches to understanding the relevance of rearrangements in the origin of species. Copyright © 2010 Elsevier Ltd. All rights reserved.
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              The diversification of South American murid rodents: evidence from mitochondrial DNA sequence data for the akodontine tribe

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                Author and article information

                Journal
                Comp Cytogenet
                Comp Cytogenet
                CompCytogen
                Comparative Cytogenetics
                Pensoft Publishers
                1993-0771
                1993-078X
                2017
                21 December 2017
                : 11
                : 4
                : 833-892
                Affiliations
                [1 ] Laboratório de Ecologia e Evolução, Instituto Butantan, Avenida Vital Brazil, 1500, CEP 05503-900, São Paulo, SP, Brazil
                [2 ] Departamento de Genética e Biologia Evolutiva, Instituto de Biociências, Universidade de São Paulo, Rua do Matão 277, CEP 05508-900, São Paulo, SP, Brazil
                Author notes
                Corresponding author: Maria José de J. Silva ( mariajose.silva@ 123456butantan.gov.br )

                Academic editor: A. Barabanov

                Article
                10.3897/CompCytogen.v11i4.19925
                5769678
                29362668
                e48703a3-3b32-4c4d-a883-8cc89b678955
                Camilla Bruno Di-Nizo, Karina Rodrigues da Silva Banci, Yukie Sato-Kuwabara, Maria José de J. Silva

                This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                : 1 August 2017
                : 23 October 2017
                Funding
                Funded by: Coordenação de Aperfeiçoamento de Pessoal de Nível Superior 501100002322 http://doi.org/10.13039/501100002322
                Categories
                Review Article

                chromosomes,rodentia,karyotype evolution,carterodon sulcidens,neacomys

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