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      First Report of Longidorus Leptocephalus Hooper, 1961 (Nematoda: Longidoridae) from Greece

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          Abstract

          Longidorid nematodes comprise more than 500 species, and Longidorus and Xiphinema are the most diversified, prevalent, and cosmopolitan genera within plant-parasitic nematodes. The genus Longidorus comprise a group of species, some of which are vectors of plant viruses. New sampling for needle nematodes was carried out in a grapevine area in Thessaloniki, northern Greece, and one nematode species of Longidorus ( L. leptocephalus) was recovered. Nematodes were extracted from soil samples by modified sieving and a decanting method. Extracted specimens were processed using glycerol, mounted on permanent slides, and subsequently identified morphologically. Nematode DNA was extracted from individual, live specimens, and PCR (Polymerase Chain Reaction) assays were performed for D2-D3 expansion segments of 28S rRNA, ITS1 rRNA, and partial mitochondrial COI regions. Morphology and morphometric data obtained from this population were consistent with the original description and reported populations of L. leptocephalus. To our knowledge, this is the first report of L. leptocephalus in Greece and the second in the Mediterranean Basin after the record of the species from Slovenia, extending the geographical distribution of this species in Europe.

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          jModelTest 2: more models, new heuristics and parallel computing.

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            MrBayes 3: Bayesian phylogenetic inference under mixed models.

            MrBayes 3 performs Bayesian phylogenetic analysis combining information from different data partitions or subsets evolving under different stochastic evolutionary models. This allows the user to analyze heterogeneous data sets consisting of different data types-e.g. morphological, nucleotide, and protein-and to explore a wide variety of structured models mixing partition-unique and shared parameters. The program employs MPI to parallelize Metropolis coupling on Macintosh or UNIX clusters.
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              MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization

              Abstract This article describes several features in the MAFFT online service for multiple sequence alignment (MSA). As a result of recent advances in sequencing technologies, huge numbers of biological sequences are available and the need for MSAs with large numbers of sequences is increasing. To extract biologically relevant information from such data, sophistication of algorithms is necessary but not sufficient. Intuitive and interactive tools for experimental biologists to semiautomatically handle large data are becoming important. We are working on development of MAFFT toward these two directions. Here, we explain (i) the Web interface for recently developed options for large data and (ii) interactive usage to refine sequence data sets and MSAs.
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                Author and article information

                Journal
                J Nematol
                J Nematol
                jofnem
                Journal of Nematology
                Sciendo
                0022-300X
                2640-396X
                February 2022
                29 July 2022
                : 54
                : 1
                : 20220027
                Affiliations
                [1 ]Institute for Sustainable Agriculture (IAS), CSIC, Avenida Menéndez Pidal s/n, Campus de Excelencia Internacional Agroalimentario , ceiA3, 14004, Córdoba, Spain
                [2 ]Benaki Phytopathological Institute, Kifisia , Athens, Greece
                [3 ]Department of Viticulture, Vegetable Crops, Floriculture and Plant Protection, Institute of Olive Tree, Subtropical Crops and Viticulture, ELGO-DIMITRA, Mesa Katsabas , 71307, Heraklion, Crete, Greece
                [4 ]Andalusian Institute of Agricultural and Fisheries Research and Training (IFAPA), Centro Alameda del Obispo , 14004, Córdoba, Spain
                Author notes

                This paper was edited by Erik J. Ragsdale.

                Article
                jofnem-2022-0027
                10.2478/jofnem-2022-0027
                9338712
                e9f80179-a03c-458a-8a76-b566b23b58a2
                © 2022 Clavero-Camacho et al. published by Sciendo

                This work is licensed under the Creative Commons Attribution 4.0 International License.

                History
                : 22 April 2022
                Page count
                Pages: 11
                Categories
                Research Paper

                cytochrome oxidase c subunit 1,d2-d3 of 28s rdna,description,its1 rdna,needle nematodes,taxonomy

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