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      Docking, Synthesis and Antiproliferative Activity of N-Acylhydrazone Derivatives Designed as Combretastatin A4 Analogues

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          Abstract

          Cancer is the second most common cause of death in the USA. Among the known classes of anticancer agents, the microtubule-targeted antimitotic drugs are considered to be one of the most important. They are usually classified into microtubule-destabilizing (e.g., Vinca alkaloids) and microtubule-stabilizing (e.g., paclitaxel) agents. Combretastatin A4 (CA-4), which is a natural stilbene isolated from Combretum caffrum, is a microtubule-destabilizing agent that binds to the colchicine domain on β-tubulin and exhibits a lower toxicity profile than paclitaxel or the Vinca alkaloids. In this paper, we describe the docking study, synthesis, antiproliferative activity and selectivity index of the N-acylhydrazone derivatives ( 5a–r) designed as CA-4 analogues. The essential structural requirements for molecular recognition by the colchicine binding site of β-tubulin were recognized, and several compounds with moderate to high antiproliferative potency (IC 50 values ≤18 µM and ≥4 nM) were identified. Among these active compounds, LASSBio-1586 ( 5b) emerged as a simple antitumor drug candidate, which is capable of inhibiting microtubule polymerization and possesses a broad in vitro and in vivo antiproliferative profile, as well as a better selectivity index than the prototype CA-4, indicating improved selective cytotoxicity toward cancer cells.

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          Most cited references19

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          Empirical scoring functions: I. The development of a fast empirical scoring function to estimate the binding affinity of ligands in receptor complexes.

          This paper describes the development of a simple empirical scoring function designed to estimate the free energy of binding for a protein-ligand complex when the 3D structure of the complex is known or can be approximated. The function uses simple contact terms to estimate lipophilic and metal-ligand binding contributions, a simple explicit form for hydrogen bonds and a term which penalises flexibility. The coefficients of each term are obtained using a regression based on 82 ligand-receptor complexes for which the binding affinity is known. The function reproduces the binding affinity of the complexes with a cross-validated error of 8.68 kJ/mol. Tests on internal consistency indicate that the coefficients obtained are stable to changes in the composition of the training set. The function is also tested on two test sets containing a further 20 and 10 complexes, respectively. The deficiencies of this type of function are discussed and it is compared to approaches by other workers.
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            Medicinal chemistry of combretastatin A4: present and future directions.

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              4',6-Diamidino-2-phenylindole, a fluorescent probe for tubulin and microtubules.

              A new fluorophor for tubulin which has permitted the monitoring of microtubule assembly in vitro is reported. DAPI (4',6-diamidino-2-phenylindole), a fluorophor already known as a DNA intercalator, was shown to bind specifically to a unique tubulin site as a dimer (KD(app) = 43 +/- 5 microM at 37 degrees C) or to tubulin associated in microtubules (KD(app) = 6 +/- 2 microM at 37 degrees C) with the same maximum enhancement in fluorescence. When tubulin polymerization was induced with GTP, the change in DAPI affinity for tubulin resulted in an enhancement of DAPI binding and, consequently, of fluorescence intensity. DAPI, whose binding site is different from that of colchicine, vinblastine, or taxol, did not interfere greatly with microtubule polymerization. It induced a slight diminution of the critical concentration for tubulin assembly due to a decrease in the depolymerizing rate constant. Moreover, DAPI did not interfere with GTP hydrolysis correlated with tubulin polymerization, but it decreased the GTPase activity at the steady state of tubulin assembly. Even at substoichiometric levels DAPI can be used to follow the kinetics of microtubule assembly.
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                Author and article information

                Contributors
                Role: Editor
                Journal
                PLoS One
                PLoS ONE
                plos
                plosone
                PLoS ONE
                Public Library of Science (San Francisco, USA )
                1932-6203
                2014
                10 March 2014
                : 9
                : 3
                : e85380
                Affiliations
                [1 ]Instituto Nacional de Ciência e Tecnologia de Fármacos e Medicamentos (INCT-INOFAR). Universidade Federal do Rio de Janeiro, Laboratório de Avaliação e Síntese de Substâncias Bioativas (LASSBio) Rio de Janeiro, Brasil
                [2 ]Programa de Pós-Graduação em Química, Instituto de Química, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brasil
                [3 ]Departamento de Fisiologia e Farmacologia, Faculdade de Medicina, Universidade Federal do Ceará, Fortaleza, Brasil
                [4 ]Departamento de Ciências Biológicas, Campus Senador Helvídio Nunes de Barros, Universidade Federal do Piauí, Picos, Brasil
                [5 ]Instituto de Física, Universidade Federal de Goiás, Goiânia, Brazil
                [6 ]Faculdade de Medicina, Departamento de Radiologia, Universidade de São Paulo, São Paulo, Brasil
                [7 ]Departamento de Química, Universidade Federal Rural do Rio de Janeiro, Seropédica, Brasil
                Univ of Bradford, United Kingdom
                Author notes

                Competing Interests: The authors have declared that no competing interests exist.

                Conceived and designed the experiments: LML JRS RC CP EJB. Performed the experiments: DNA BCC DPB PMPF RPC CMLM CMRS. Analyzed the data: LML EJB CMRS JRS RC CP DNA. Contributed reagents/materials/analysis tools: LML EJB JRS RC CP. Wrote the paper: LML DNA CP. Design conception: LML EJB. Synthesis: DNA LML EJB. Molecular modelling: DNA CMRS. Experimental design: LML EJB RC CP BCC. In vivo experiments: CP RC PMPF CMLM DPB. Raios-X: JRS RPC.

                Article
                PONE-D-13-36440
                10.1371/journal.pone.0085380
                3948622
                24614859
                efb5a4b1-d33d-4208-bfe5-43c6c834a929
                Copyright @ 2014

                This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                : 4 September 2013
                : 26 November 2013
                Page count
                Pages: 16
                Funding
                This work was supported by CNPq (BR), FAPERJ (BR) and INCT-INOFAR (BR, 573.564/2008-6 and E-26/170.020/2008). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
                Categories
                Research Article
                Biology
                Biochemistry
                Proteins
                Cytoskeletal Proteins
                Drug Discovery
                Biotechnology
                Drug Discovery
                Molecular Cell Biology
                Cellular Structures
                Cytoskeleton
                Chemistry
                Computational Chemistry
                Medicinal Chemistry
                Organic Chemistry
                Medicine
                Drugs and Devices
                Drug Research and Development
                Oncology
                Basic Cancer Research
                Cancer Treatment

                Uncategorized
                Uncategorized

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