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      The PI3K pathway as a therapeutic intervention point in inflammatory bowel disease

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          Abstract

          With glucose being the preferred source of energy in activated T cells, targeting glycolysis has become an attractive therapeutic intervention point for chronic inflammatory bowel diseases (IBD). The switch to glycolysis is mediated by phosphoinositide‐3‐kinases (PI3K) which relay signals from surface receptors to the AKT pathway. We first confirmed by analysis of the oxygen consumption rate (OCR) and extracellular acidification rate (ECAR) that metabolism is shifted towards glycolysis in IBD patients as compared to non‐IBD donors. In contrast to non‐IBD donors, OCR correlated with ECAR (IBD: cor = 0.79, p = 2E‐10; non‐IBD: cor = 0.37, p = n.s.), in IBD patients. Second, we tested the PI3K inhibitor copanlisib as a potential therapeutic. Ex vivo, copanlisib suppressed the ECAR significantly in T cells activated by anti‐CD3 antibodies and significantly decreased ECAR rates in the presence of copanlisib (anti‐CD3: 58.24 ± 29.06; copanlisib: 43.16 ± 20.23, p < .000. In addition, copanlisib impaired the activation of CD4 + CD25 + T cells (anti‐CD3: 42.15 ± 21.46; anti‐CD3 + copanlisib: 26.06 ± 21.82 p = .013) and the secretion of cytokines (IFNγ: anti‐CD3: 6332.0 ± 5707.61 pmol/ml; anti‐CD3 + copanlisib: 6332.0 ± 5707.61, p = .018). In vivo, copanlisib significantly improved the histological scores (ethanol: 8.5 ± 3.81; copanlisib: 4.57 ± 2.82, p = .006) in the NSG‐UC mouse model. Orthogonal partial least square analysis confirmed the efficacy of copanlisib. These data suggest that the PI3K pathway provides an attractive therapeutic intervention point in IBD for patients in relapse. Targeting metabolic pathways have the potential to develop phase dependent therapies.

          Graphical abstract

          In response to an inflammatory assault T cells favor glycolysis to ensure swit energy supply required for proliferation, migration and secretion of cytokines, chemokines and growth factors. Therefore, targetinginflammation has come into focus of interest as a therapeutical intervention point in chronic inflammatory bowel diseases. The phosphoinositide‐3‐kinases inhibitor copanlisib inhibits glycolysis and suppresses inflammation in a mouse model of ulcerative colitis.

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          Moving beyond P values: data analysis with estimation graphics

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            Intra- and Inter-cellular Rewiring of the Human Colon during Ulcerative Colitis

            Genome-wide association studies (GWAS) have revealed risk alleles for ulcerative colitis (UC). To understand their cell type specificities and pathways of action, we generate an atlas of 366,650 cells from the colon mucosa of 18 UC patients and 12 healthy individuals, revealing 51 epithelial, stromal, and immune cell subsets, including BEST4+ enterocytes, microfold-like cells, and IL13RA2+IL11+ inflammatory fibroblasts, which we associate with resistance to anti-TNF treatment. Inflammatory fibroblasts, inflammatory monocytes, microfold-like cells, and T cells that co-express CD8 and IL-17 expand with disease, forming intercellular interaction hubs. Many UC risk genes are cell type specific and co-regulated within relatively few gene modules, suggesting convergence onto limited sets of cell types and pathways. Using this observation, we nominate and infer functions for specific risk genes across GWAS loci. Our work provides a framework for interrogating complex human diseases and mapping risk variants to cell types and pathways.
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              The new statistics: why and how.

              We need to make substantial changes to how we conduct research. First, in response to heightened concern that our published research literature is incomplete and untrustworthy, we need new requirements to ensure research integrity. These include prespecification of studies whenever possible, avoidance of selection and other inappropriate data-analytic practices, complete reporting, and encouragement of replication. Second, in response to renewed recognition of the severe flaws of null-hypothesis significance testing (NHST), we need to shift from reliance on NHST to estimation and other preferred techniques. The new statistics refers to recommended practices, including estimation based on effect sizes, confidence intervals, and meta-analysis. The techniques are not new, but adopting them widely would be new for many researchers, as well as highly beneficial. This article explains why the new statistics are important and offers guidance for their use. It describes an eight-step new-statistics strategy for research with integrity, which starts with formulation of research questions in estimation terms, has no place for NHST, and is aimed at building a cumulative quantitative discipline.
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                Author and article information

                Contributors
                roswitha.gropp@med.uni-muenchen.de
                Journal
                Immun Inflamm Dis
                Immun Inflamm Dis
                10.1002/(ISSN)2050-4527
                IID3
                Immunity, Inflammation and Disease
                John Wiley and Sons Inc. (Hoboken )
                2050-4527
                04 May 2021
                September 2021
                : 9
                : 3 ( doiID: 10.1002/iid3.v9.3 )
                : 804-818
                Affiliations
                [ 1 ] Department of General, Visceral, and Transplantation Surgery University Hospital, LMU Munich Germany
                [ 2 ] Department of Medicine II University Hospital, LMU München Germany
                [ 3 ]Present address: 41 Drum Hill Drive, Summit, NJ 07901 USA
                Author notes
                [*] [* ] Correspondence Roswitha Gropp, Department of General, Visceral, and Transplantation Surgery, University Hospital, LMU, Munich, Nussbaumstr. 20, 80336 Munich, Germany.

                Email: roswitha.gropp@ 123456med.uni-muenchen.de .

                Author information
                http://orcid.org/0000-0003-4756-261X
                Article
                IID3435
                10.1002/iid3.435
                8342202
                33942546
                f380665d-0560-4546-8bce-5fc573ee4209
                © 2021 The Authors. Immunity, Inflammation and Disease published by John Wiley & Sons Ltd.

                This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.

                History
                : 26 March 2021
                : 19 January 2021
                : 29 March 2021
                Page count
                Figures: 7, Tables: 1, Pages: 15, Words: 7717
                Funding
                Funded by: D.E. Shaw Research
                Categories
                Original Article
                Original Articles
                Custom metadata
                2.0
                September 2021
                Converter:WILEY_ML3GV2_TO_JATSPMC version:6.0.4 mode:remove_FC converted:05.08.2021

                copanlisib,immune‐metabolism,inflammatory bowel disease,nsg‐uc mouse model,pi3k,ulcerative colitis

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