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      The zinc transporter, ZIP12, regulates the pulmonary vascular response to chronic hypoxia

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          Abstract

          The typical response of the adult mammalian pulmonary circulation to a low oxygen environment is vasoconstriction and structural remodelling of pulmonary arterioles, leading to chronic elevation of pulmonary artery pressure (pulmonary hypertension) and right ventricular hypertrophy. Some mammals, however, exhibit genetic resistance to hypoxia-induced pulmonary hypertension 1- 3 . We used a congenic breeding program and comparative genomics to exploit this variation in the rat and identified the gene, Slc39a12, as a major regulator of hypoxia-induced pulmonary vascular remodelling. Slc39a12 encodes the zinc transporter, ZIP12. We report that ZIP12 expression is increased in many cell types, including endothelial, smooth muscle and interstitial cells, in the remodelled pulmonary arterioles of rats, cows and humans susceptible to hypoxia-induced pulmonary hypertension. We show that ZIP12 expression in pulmonary vascular smooth muscle cells is hypoxia-dependent and that targeted inhibition of ZIP12 inhibits the rise in intracellular labile zinc in hypoxia-exposed pulmonary vascular smooth muscle cells and their proliferation in culture. We demonstrate that genetic disruption of ZIP12 expression attenuates the development of pulmonary hypertension in rats housed in a hypoxic atmosphere. This entirely novel and unexpected insight into the fundamental role of a zinc transporter in mammalian pulmonary vascular homeostasis suggests a new drug target for the pharmacological management of pulmonary hypertension.

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          For the past 25 years NIH Image and ImageJ software have been pioneers as open tools for the analysis of scientific images. We discuss the origins, challenges and solutions of these two programs, and how their history can serve to advise and inform other software projects.
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            BioMart Central Portal—unified access to biological data

            BioMart Central Portal (www.biomart.org) offers a one-stop shop solution to access a wide array of biological databases. These include major biomolecular sequence, pathway and annotation databases such as Ensembl, Uniprot, Reactome, HGNC, Wormbase and PRIDE; for a complete list, visit, http://www.biomart.org/biomart/martview. Moreover, the web server features seamless data federation making cross querying of these data sources in a user friendly and unified way. The web server not only provides access through a web interface (MartView), it also supports programmatic access through a Perl API as well as RESTful and SOAP oriented web services. The website is free and open to all users and there is no login requirement.
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              Ensembl’s 10th year

              Ensembl (http://www.ensembl.org) integrates genomic information for a comprehensive set of chordate genomes with a particular focus on resources for human, mouse, rat, zebrafish and other high-value sequenced genomes. We provide complete gene annotations for all supported species in addition to specific resources that target genome variation, function and evolution. Ensembl data is accessible in a variety of formats including via our genome browser, API and BioMart. This year marks the tenth anniversary of Ensembl and in that time the project has grown with advances in genome technology. As of release 56 (September 2009), Ensembl supports 51 species including marmoset, pig, zebra finch, lizard, gorilla and wallaby, which were added in the past year. Major additions and improvements to Ensembl since our previous report include the incorporation of the human GRCh37 assembly, enhanced visualisation and data-mining options for the Ensembl regulatory features and continued development of our software infrastructure.
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                Author and article information

                Journal
                0410462
                6011
                Nature
                Nature
                Nature
                0028-0836
                1476-4687
                5 June 2015
                10 August 2015
                20 August 2015
                14 August 2018
                : 524
                : 7565
                : 356-360
                Affiliations
                [1 ]Centre for Pharmacology and Therapeutics, Division of Experimental Medicine, Imperial College London, Hammersmith Hospital, London W12 0NN, United Kingdom
                [2 ]Section of Cell Biology and Functional Genomics, Division of Diabetes, Endocrinology and Metabolism, Imperial College London, Hammersmith Hospital, London W12 0NN, United Kingdom
                [3 ]Section of Epigenomics and Disease, Department of Medicine, Faculty of Medicine, Imperial College London, Hammersmith Hospital, London W12 0NN, United Kingdom
                [4 ]Physiological Genomics and Medicine Group, Medical Research Council Clinical Sciences Centre, Hammersmith Hospital, London W12 0NN, United Kingdom
                [5 ]Transgenics and Embryonic Stem Cell Laboratory, Medical Research Council Clinical Sciences Centre, Hammersmith Hospital, London W12 0NN, United Kingdom
                [6 ]Institute of Molecular Biology and Medicine, Bishkek, Kyrgyzstan
                [7 ]Department of Pediatrics and Medicine, Division of Critical Care Medicine and Cardiovascular Pulmonary Research Laboratories, University of Colorado Denver, Denver, CO, United States
                Author notes
                [] Corresponding author: Dr Lan Zhao. Centre for Pharmacology and Therapeutics, Experimental Medicine, Imperial College London, Hammersmith Hospital, Du Cane Road, London W12 0NN, UK. Telephone: 44-(0) 20 7594 6823; l.zhao@ 123456imperial.ac.uk
                [8]

                Current address: Centre for Genomic and Experimental Medicine, University of Edinburgh, EH4 2XU, United Kingdom.

                Contributions

                L.Z. and M.R.W. were principal investigators on grants from the British Heart Foundation, developed concepts and supervised the project. L.Z., M.R.W., and E.O. designed and implemented the experiments. T.A. gave conceptual advice on the congenic program and whole genome sequencing. L.Z., M.R.W., T.A., K.M., E.O. and O.D.D. conducted the congenic breeding program. S.S.A. analysed whole genome sequence data and performed the Polyphen analysis. L.Z., E.O. and O.D.D., with the support of B.M. and Z.W., generated the ZIP12 transgenic rat. L.Z., E.C. and L.W. performed immunohistochemistry and immunofluorescence. E.O. conducted the in vitro cell culture experiment. C.A. and E.O. performed the angiogenesis assay. G.R. supervised and E.O. and P.L.C. conducted the intracellular labile zinc measurement experiments. C-N.C. and E.O. performed ChIP-PCR. J.P-C. and E.O. cloned the HRE construct and performed luciferase reporter assays. M.G.F., K.R.S. and A.A provided cattle and human lung sections. E.O. performed statistic analysis. L.Z., M.R.W., and E.O. interpreted the data and wrote the manuscript. T.A., G.R., J.F., S.S.A. and K.D. edited the manuscript.

                Article
                EMS63712
                10.1038/nature14620
                6091855
                26258299
                f59b1e75-b4bf-46eb-bb38-a37e4000c9ae

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