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      Influenza D virus M2 protein exhibits ion channel activity in Xenopus laevis oocytes

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          Abstract

          Background

          A new type of influenza virus, known as type D, has recently been identified in cattle and pigs. Influenza D virus infection in cattle is typically asymptomatic; however, its infection in swine can result in clinical disease. Swine can also be infected with all other types of influenza viruses, namely A, B, and C. Consequently, swine can serve as a “mixing vessel” for highly pathogenic influenza viruses, including those with zoonotic potential. Currently, the only antiviral drug available targets influenza M2 protein ion channel is not completely effective. Thus, it is necessary to develop an M2 ion channel blocker capable of suppressing the induction of resistance to the genetic shift. To provide a basis for developing novel ion channel-blocking compounds, we investigated the properties of influenza D virus M2 protein (DM2) as a drug target.

          Results

          To test the ion channel activity of DM2, the DNA corresponding to DM2 with cMyc-tag conjugated to its carboxyl end was cloned into the shuttle vector pNCB1. The mRNA of the DM2–cMyc gene was synthesized and injected into Xenopus oocytes. The translation products of DM2–cMyc mRNA were confirmed by immunofluorescence and mass spectrometry analyses. The DM2–cMyc mRNA-injected oocytes were subjected to the two-electrode voltage-clamp (TEVC) method, and the induced inward current was observed. The midpoint (V mid) values in Boltzmann modeling for oocytes injected with DM2–cMyc RNA or a buffer were −152 and −200 mV, respectively. Assuming the same expression level in the Xenopus oocytes, DM2 without tag and influenza C virus M2 protein (CM2) were subjected to the TEVC method. DM2 exhibited ion channel activity under the condition that CM2 ion channel activity was reproduced. The gating voltages represented by V mid for CM2 and DM2 were –141 and –146 mV, respectively. The reversal potentials observed in ND96 for CM2 and DM2 were −21 and −22 mV, respectively. Compared with intact DM2, DM2 variants with mutation in the YxxxK motif, namely Y72A and K76A DM2, showed lower V mid values while showing no change in reversal potential.

          Conclusion

          The M2 protein from newly isolated influenza D virus showed ion channel activity similar to that of CM2. The gating voltage was shown to be affected by the YxxxK motif and by the hydrophobicity and bulkiness of the carboxyl end of the molecule.

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          Most cited references41

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          Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search.

          We present a statistical model to estimate the accuracy of peptide assignments to tandem mass (MS/MS) spectra made by database search applications such as SEQUEST. Employing the expectation maximization algorithm, the analysis learns to distinguish correct from incorrect database search results, computing probabilities that peptide assignments to spectra are correct based upon database search scores and the number of tryptic termini of peptides. Using SEQUEST search results for spectra generated from a sample of known protein components, we demonstrate that the computed probabilities are accurate and have high power to discriminate between correctly and incorrectly assigned peptides. This analysis makes it possible to filter large volumes of MS/MS database search results with predictable false identification error rates and can serve as a common standard by which the results of different research groups are compared.
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            Cation-pi interactions in structural biology.

            Cation-pi interactions in protein structures are identified and evaluated by using an energy-based criterion for selecting significant sidechain pairs. Cation-pi interactions are found to be common among structures in the Protein Data Bank, and it is clearly demonstrated that, when a cationic sidechain (Lys or Arg) is near an aromatic sidechain (Phe, Tyr, or Trp), the geometry is biased toward one that would experience a favorable cation-pi interaction. The sidechain of Arg is more likely than that of Lys to be in a cation-pi interaction. Among the aromatics, a strong bias toward Trp is clear, such that over one-fourth of all tryptophans in the data bank experience an energetically significant cation-pi interaction.
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              Subunit stoichiometry of a mammalian K+ channel determined by construction of multimeric cDNAs.

              The subunit stoichiometry of the mammalian K+ channel KV1.1 (RCK1) was examined by linking together the coding sequences of 2-5 K+ channel subunits in a single open reading frame and tagging the expression of individual subunits with a mutation (Y379K or Y379R) that altered the sensitivity of the channel to block by external tetraethylammonium ion. Two lines of evidence argue that these constructs lead to K+ channel expression only through the formation of functional tetramers. First, currents expressed by tetrameric constructs containing a single mutant subunit have a sensitivity to tetraethylammonium that is well fitted by a single site binding isotherm. Second, a mutant subunit (Y379K) that expresses only as part of a heteromultimer contributes to the expression of functional channels when coexpressed with a trimeric construct but not a tetrameric construct.
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                Author and article information

                Contributors
                Role: Data curationRole: InvestigationRole: MethodologyRole: Writing – original draft
                Role: Data curationRole: InvestigationRole: MethodologyRole: Writing – original draft
                Role: Data curationRole: InvestigationRole: Methodology
                Role: Formal analysisRole: MethodologyRole: Writing – review & editing
                Role: ConceptualizationRole: Writing – review & editing
                Role: ConceptualizationRole: Funding acquisitionRole: InvestigationRole: SupervisionRole: Writing – review & editing
                Role: Editor
                Journal
                PLoS One
                PLoS ONE
                plos
                plosone
                PLoS ONE
                Public Library of Science (San Francisco, CA USA )
                1932-6203
                21 June 2018
                2018
                : 13
                : 6
                : e0199227
                Affiliations
                [001]School of Biological Sciences, University of Nebraska-Lincoln, Lincoln, Nebraska, United States of America
                Institut de Genetique et Developpement de Rennes, FRANCE
                Author notes

                Competing Interests: The authors have declared that no competing interests exist.

                Author information
                http://orcid.org/0000-0002-3101-8321
                http://orcid.org/0000-0001-7815-1181
                Article
                PONE-D-18-03229
                10.1371/journal.pone.0199227
                6013169
                29927982
                f644ff8f-29ad-4fb9-bbf9-46d9f64e8977
                © 2018 Kesinger et al

                This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                : 31 January 2018
                : 4 June 2018
                Page count
                Figures: 6, Tables: 2, Pages: 16
                Funding
                Funded by: Hatch Equipment Grants from the University of Nebraska–Lincoln
                Award Recipient :
                Funded by: Nebraska Corn Board
                Award Recipient :
                Funded by: Central States Center for Agricultural Safety and Health (CS-CASH) Pilot Project, College of Public Health, Nebraska Medical Center
                Award Recipient :
                Funded by: Undergraduate Creative Activities and Research Experience (UCARE) at University of Nebraska-Lincoln
                Award Recipient :
                Funded by: Graduate Student Special Funds, School of Biological Sciences, University of Nebraska-Lincoln
                Award Recipient :
                This work was supported by Hatch Equipment Grants from the University of Nebraska—Lincoln (2013-2014; Blair Siegfried, Etsuko Moriyama, Hideaki Moiryma; bought the Two-electrode voltage clamp tool; The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript), https://ard.unl.edu/funding-programrfa-title/hatch-equipment-grants; Nebraska Corn Board (1759080; PI, Etsuko Moriyama; Hideaki Moriyama Co-PI; partly support supplies and partly support for Evan Kesinger; The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript), http://www.nebraskacorn.org; Central States Center for Agricultural Safety and Health (CS-CASH) Pilot Project, College of Public Health, Nebraska Medical Center (Hideaki Moriyama; partly support supplies and publication fee; The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript), https://www.unmc.edu/publichealth/cscash/; Undergraduate Creative Activities and Research Experience (UCARE) at University of Nebraska-Lincoln (2015-2016; Aaron Jensen; support for Aaron Jensen in part; The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript), https://ucare.unl.edu; Graduate Student Special Funds, School of Biological Sciences, University of Nebraska-Lincoln (2017-2018; Evan Kesinger; support for supply in part; The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript), https://biosci.unl.edu/financial-aid-current-graduate-students.
                Categories
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