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      A Bayesian Network Model for Predicting Post-stroke Outcomes With Available Risk Factors

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          Abstract

          Bayesian network is an increasingly popular method in modeling uncertain and complex problems, because its interpretability is often more useful than plain prediction. To satisfy the core requirement in medical research to obtain interpretable prediction with high accuracy, we constructed an inference engine for post-stroke outcomes based on Bayesian network classifiers. The prediction system that was trained on data of 3,605 patients with acute stroke forecasts the functional independence at 3 months and the mortality 1 year after stroke. Feature selection methods were applied to eliminate less relevant and redundant features from 76 risk variables. The Bayesian network classifiers were trained with a hill-climbing searching for the qualified network structure and parameters measured by maximum description length. We evaluated and optimized the proposed system to increase the area under the receiver operating characteristic curve (AUC) while ensuring acceptable sensitivity for the class-imbalanced data. The performance evaluation demonstrated that the Bayesian network with selected features by wrapper-type feature selection can predict 3-month functional independence with an AUC of 0.889 using only 19 risk variables and 1-year mortality with an AUC of 0.893 using 24 variables. The Bayesian network with 50 features filtered by information gain can predict 3-month functional independence with an AUC of 0.875 and 1-year mortality with an AUC of 0.895. We also built an online prediction service, Yonsei Stroke Outcome Inference System, to substantialize the proposed solution for patients with stroke.

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          Most cited references51

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          Wrappers for feature subset selection

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            A Bayesian networks approach for predicting protein-protein interactions from genomic data.

            R. Jansen (2003)
            We have developed an approach using Bayesian networks to predict protein-protein interactions genome-wide in yeast. Our method naturally weights and combines into reliable predictions genomic features only weakly associated with interaction (e.g., messenger RNAcoexpression, coessentiality, and colocalization). In addition to de novo predictions, it can integrate often noisy, experimental interaction data sets. We observe that at given levels of sensitivity, our predictions are more accurate than the existing high-throughput experimental data sets. We validate our predictions with TAP (tandem affinity purification) tagging experiments. Our analysis, which gives a comprehensive view of yeast interactions, is available at genecensus.org/intint.
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              Learning Bayesian networks: The combination of knowledge and statistical data

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                Author and article information

                Contributors
                Journal
                Front Neurol
                Front Neurol
                Front. Neurol.
                Frontiers in Neurology
                Frontiers Media S.A.
                1664-2295
                07 September 2018
                2018
                : 9
                : 699
                Affiliations
                [1] 1Cardiovascular Research Institute, College of Medicine, Yonsei University , Seoul, South Korea
                [2] 2Department of Cardiology, College of Medicine, Yonsei University , Seoul, South Korea
                [3] 3Department of Neurology, College of Medicine, Yonsei University , Seoul, South Korea
                Author notes

                Edited by: Fabien Scalzo, University of California, Los Angeles, United States

                Reviewed by: Jens Fiehler, Universitätsklinikum Hamburg-Eppendorf, Germany; Katharina Stibrant Sunnerhagen, University of Gothenburg, Sweden

                *Correspondence: Hyo Suk Nam hsnam@ 123456yuhs.ac

                This article was submitted to Stroke, a section of the journal Frontiers in Neurology

                Article
                10.3389/fneur.2018.00699
                6137617
                30245663
                f99bb9df-aba5-4d10-b76c-c98d5b72ba2b
                Copyright © 2018 Park, Chang and Nam.

                This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

                History
                : 30 May 2018
                : 02 August 2018
                Page count
                Figures: 6, Tables: 1, Equations: 3, References: 65, Pages: 11, Words: 6734
                Funding
                Funded by: National Research Foundation of Korea 10.13039/501100003725
                Award ID: 2017R1D1A1B03029014
                Award ID: 2016R1C1B2016028
                Categories
                Neurology
                Original Research

                Neurology
                stroke,bayesian network,prognostic model,machine learning classification,decision support techniques,imbalanced data

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