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      Further Advance of Gambierdiscus Species in the Canary Islands, with the First Report of Gambierdiscus belizeanus

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          Abstract

          Ciguatera Poisoning (CP) is a human food-borne poisoning that has been known since ancient times to be found mainly in tropical and subtropical areas, which occurs when fish or very rarely invertebrates contaminated with ciguatoxins (CTXs) are consumed. The genus of marine benthic dinoflagellates Gambierdiscus produces CTX precursors. The presence of Gambierdiscus species in a region is one indicator of CP risk. The Canary Islands (North Eastern Atlantic Ocean) is an area where CP cases have been reported since 2004. In the present study, samplings for Gambierdiscus cells were conducted in this area during 2016 and 2017. Gambierdiscus cells were isolated and identified as G. australes, G. excentricus, G. caribaeus, and G. belizeanus by molecular analysis. In this study, G. belizeanus is reported for the first time in the Canary Islands. Gambierdiscus isolates were cultured, and the CTX-like toxicity of forty-one strains was evaluated with the neuroblastoma cell-based assay (neuro-2a CBA). G. excentricus exhibited the highest CTX-like toxicity (9.5–2566.7 fg CTX1B equiv. cell −1) followed by G. australes (1.7–452.6.2 fg CTX1B equiv. cell −1). By contrast, the toxicity of G. belizeanus was low (5.6 fg CTX1B equiv. cell −1), and G. caribaeus did not exhibit CTX-like toxicity. In addition, for the G. belizeanus strain, the production of CTXs was evaluated with a colorimetric immunoassay and an electrochemical immunosensor resulting in G. belizeanus producing two types of CTX congeners (CTX1B and CTX3C series congeners) and can contribute to CP in the Canary Islands.

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          RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

          Motivation: Phylogenies are increasingly used in all fields of medical and biological research. Moreover, because of the next-generation sequencing revolution, datasets used for conducting phylogenetic analyses grow at an unprecedented pace. RAxML (Randomized Axelerated Maximum Likelihood) is a popular program for phylogenetic analyses of large datasets under maximum likelihood. Since the last RAxML paper in 2006, it has been continuously maintained and extended to accommodate the increasingly growing input datasets and to serve the needs of the user community. Results: I present some of the most notable new features and extensions of RAxML, such as a substantial extension of substitution models and supported data types, the introduction of SSE3, AVX and AVX2 vector intrinsics, techniques for reducing the memory requirements of the code and a plethora of operations for conducting post-analyses on sets of trees. In addition, an up-to-date 50-page user manual covering all new RAxML options is available. Availability and implementation: The code is available under GNU GPL at https://github.com/stamatak/standard-RAxML. Contact: alexandros.stamatakis@h-its.org Supplementary information: Supplementary data are available at Bioinformatics online.
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            Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7

            Abstract Bayesian inference of phylogeny using Markov chain Monte Carlo (MCMC) plays a central role in understanding evolutionary history from molecular sequence data. Visualizing and analyzing the MCMC-generated samples from the posterior distribution is a key step in any non-trivial Bayesian inference. We present the software package Tracer (version 1.7) for visualizing and analyzing the MCMC trace files generated through Bayesian phylogenetic inference. Tracer provides kernel density estimation, multivariate visualization, demographic trajectory reconstruction, conditional posterior distribution summary, and more. Tracer is open-source and available at http://beast.community/tracer.
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              jModelTest 2: more models, new heuristics and parallel computing.

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                Author and article information

                Journal
                Toxins (Basel)
                Toxins (Basel)
                toxins
                Toxins
                MDPI
                2072-6651
                31 October 2020
                November 2020
                : 12
                : 11
                : 692
                Affiliations
                [1 ]Institut de Recerca i Tecnologies Agroalimentàries (IRTA), Ctra. Poble Nou Km 5.5, Sant Carles de la Ràpita, 43540 Tarragona, Spain; angie.ducaebre@ 123456gmail.com (À.T.); greta.gaiani@ 123456irta.cat (G.G.); maria.rey@ 123456irta.cat (M.R.V.); karl.andree@ 123456irta.cat (K.B.A.); margarita.fernandez@ 123456irta.cat (M.F.-T.); monica.campas@ 123456irta.cat (M.C.)
                [2 ]Department of Biological Science, Graduate School of Science, Osaka Prefecture University, Osaka 599-8570, Japan; tsumu@ 123456b.s.osakafu-u.ac.jp
                Author notes
                Author information
                https://orcid.org/0000-0001-5303-5053
                https://orcid.org/0000-0001-8979-2160
                https://orcid.org/0000-0002-2875-1135
                https://orcid.org/0000-0002-1220-7100
                https://orcid.org/0000-0002-6567-6891
                Article
                toxins-12-00692
                10.3390/toxins12110692
                7693352
                33142836
                ffb8f8ad-816e-47fd-aa08-eb3460ed001e
                © 2020 by the authors.

                Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license ( http://creativecommons.org/licenses/by/4.0/).

                History
                : 22 September 2020
                : 27 October 2020
                Categories
                Article

                Molecular medicine
                ciguatera,ciguatoxins (ctxs),gambierdiscus,neuroblastoma cell-based assay (cba),immunoassay,immunosensor

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