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      The genetics and molecular biology of T-ALL

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          Abstract

          T-cell acute lymphoblastic leukemia (T-ALL) is an aggressive malignancy caused by the accumulation of genomic lesions that affect the development of T-cells. Since many years, it has been established that deregulated expression of transcription factors, impairment of the CDKN2A/2B cell cycle regulators and hyperactive NOTCH1 signaling play prominent roles in the pathogenesis of this leukemia. In the past decade, systematic screening of T-ALL genomes by high resolution copy number arrays and next- generation sequencing technologies has revealed that T-cell progenitors accumulate additional mutations affecting JAK/STAT signaling, protein translation and epigenetic control, providing novel attractive targets for therapy. In this review, we provide an update on our knowledge on T-ALL pathogenesis, on the opportunities for the introduction of targeted therapy and on the challenges that are still ahead.

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          Most cited references77

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          Mutation and cancer: statistical study of retinoblastoma.

          A Knudson (1971)
          Based upon observations on 48 cases of retinoblastoma and published reports, the hypothesis is developed that retinoblastoma is a cancer caused by two mutational events. In the dominantly inherited form, one mutation is inherited via the germinal cells and the second occurs in somatic cells. In the nonhereditary form, both mutations occur in somatic cells. The second mutation produces an average of three retinoblastomas per individual inheriting the first mutation. Using Poisson statistics, one can calculate that this number (three) can explain the occasional gene carrier who gets no tumor, those who develop only unilateral tumors, and those who develop bilateral tumors, as well as explaining instances of multiple tumors in one eye. This value for the mean number of tumors occurring in genetic carriers may be used to estimate the mutation rate for each mutation. The germinal and somatic rates for the first, and the somatic rate for the second, mutation, are approximately equal. The germinal mutation may arise in some instances from a delayed mutation.
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            Beyond PTEN mutations: the PI3K pathway as an integrator of multiple inputs during tumorigenesis.

            The tumour-suppressor phosphatase with tensin homology (PTEN) is the most important negative regulator of the cell-survival signalling pathway initiated by phosphatidylinositol 3-kinase (PI3K). Although PTEN is mutated or deleted in many tumours, deregulation of the PI3K-PTEN network also occurs through other mechanisms. Crosstalk between the PI3K pathways and other tumorigenic signalling pathways, such as those that involve Ras, p53, TOR (target of rapamycin) or DJ1, can contribute to this deregulation. How does the PI3K pathway integrate signals from numerous sources, and how can this information be used in the rational design of cancer therapies?
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              RNA G-quadruplexes cause eIF4A-dependent oncogene translation in cancer

              The translational control of oncoprotein expression is implicated in many cancers. Here we report an eIF4A/DDX2 RNA helicase-dependent mechanism of translational control that contributes to oncogenesis and underlies the anticancer effects of Silvestrol and related compounds. For example, eIF4A promotes T-ALL development in vivo and is required for leukaemia maintenance. Accordingly, inhibition of eIF4A with Silvestrol has powerful therapeutic effects in vitro and in vivo. We use transcriptome-scale ribosome footprinting to identify the hallmarks of eIF4A-dependent transcripts. These include 5′UTR sequences such as the 12-mer guanine quartet (CGG)4 motif that can form RNA G-quadruplex structures. Notably, among the most eIF4A-dependent and Silvestrol-sensitive transcripts are a number of oncogenes, super-enhancer associated transcription factors, and epigenetic regulators. Hence, the 5′UTRs of selected cancer genes harbour a targetable requirement for the eIF4A RNA helicase.
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                Author and article information

                Journal
                7603509
                1243
                Blood
                Blood
                Blood
                0006-4971
                1528-0020
                16 March 2017
                23 January 2017
                02 March 2017
                23 March 2017
                : 129
                : 9
                : 1113-1123
                Affiliations
                [1 ]Department of Oncology, KU Leuven, Leuven, Belgium
                [2 ]Leuven Cancer Institute (LKI), Leuven, Belgium
                [3 ]VIB Center for the Biology of Disease, Leuven, Belgium
                [4 ]Center for Human Genetics, KU Leuven, Leuven, Belgium
                Author notes
                Correspondence, Jan Cools: CME, Campus Gasthuisberg O&N4, Herestraat 49 (box 602), 3000 Leuven, Belgium, jan.cools@ 123456kuleuven.be , Kim De Keersmaecker: Department of Oncology, Campus Gasthuisberg O&N1, Herestraat 49 (box 603), 3000 Leuven, Belgium. kim.dekeersmaecker@ 123456kuleuven.be
                Article
                PMC5363819 PMC5363819 5363819 ems71935
                10.1182/blood-2016-10-706465
                5363819
                28115373
                bca57f52-f53e-4421-9a53-b30eea05b907
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