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      SarS Is a Repressor of Staphylococcus aureus Bicomponent Pore-Forming Leukocidins

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          ABSTRACT

          Staphylococcus aureus is a successful pathogen that produces a wide range of virulence factors that it uses to subvert and suppress the immune system. These include the bicomponent pore-forming leukocidins. How the expression of these toxins is regulated is not completely understood. Here, we describe a screen to identify transcription factors involved in the regulation of leukocidins. The most prominent discovery from this screen is that SarS, a known transcription factor which had previously been described as a repressor of alpha-toxin expression, was found to be a potent repressor of leukocidins LukED and LukSF-PV. We found that inactivating sarS resulted in increased virulence both in an ex vivo model using primary human neutrophils and in an in vivo infection model in mice. Further experimentation revealed that SarS represses leukocidins by serving as an activator of Rot, a critical repressor of toxins, as well as by directly binding and repressing the leukocidin promoters. By studying contemporary clinical isolates, we identified naturally occurring mutations in the sarS promoter that resulted in overexpression of sarS and increased repression of leukocidins in USA300 bloodstream clinical isolates. Overall, these data establish SarS as an important repressor of leukocidins and expand our understanding of how these virulence factors are being regulated in vitro and in vivo by S. aureus.

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          Matplotlib: A 2D Graphics Environment

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            Staphylococcus aureus infections: epidemiology, pathophysiology, clinical manifestations, and management.

            Staphylococcus aureus is a major human pathogen that causes a wide range of clinical infections. It is a leading cause of bacteremia and infective endocarditis as well as osteoarticular, skin and soft tissue, pleuropulmonary, and device-related infections. This review comprehensively covers the epidemiology, pathophysiology, clinical manifestations, and management of each of these clinical entities. The past 2 decades have witnessed two clear shifts in the epidemiology of S. aureus infections: first, a growing number of health care-associated infections, particularly seen in infective endocarditis and prosthetic device infections, and second, an epidemic of community-associated skin and soft tissue infections driven by strains with certain virulence factors and resistance to β-lactam antibiotics. In reviewing the literature to support management strategies for these clinical manifestations, we also highlight the paucity of high-quality evidence for many key clinical questions.
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              BIGSdb: Scalable analysis of bacterial genome variation at the population level

              Background The opportunities for bacterial population genomics that are being realised by the application of parallel nucleotide sequencing require novel bioinformatics platforms. These must be capable of the storage, retrieval, and analysis of linked phenotypic and genotypic information in an accessible, scalable and computationally efficient manner. Results The Bacterial Isolate Genome Sequence Database (BIGSDB) is a scalable, open source, web-accessible database system that meets these needs, enabling phenotype and sequence data, which can range from a single sequence read to whole genome data, to be efficiently linked for a limitless number of bacterial specimens. The system builds on the widely used mlstdbNet software, developed for the storage and distribution of multilocus sequence typing (MLST) data, and incorporates the capacity to define and identify any number of loci and genetic variants at those loci within the stored nucleotide sequences. These loci can be further organised into 'schemes' for isolate characterisation or for evolutionary or functional analyses. Isolates and loci can be indexed by multiple names and any number of alternative schemes can be accommodated, enabling cross-referencing of different studies and approaches. LIMS functionality of the software enables linkage to and organisation of laboratory samples. The data are easily linked to external databases and fine-grained authentication of access permits multiple users to participate in community annotation by setting up or contributing to different schemes within the database. Some of the applications of BIGSDB are illustrated with the genera Neisseria and Streptococcus. The BIGSDB source code and documentation are available at http://pubmlst.org/software/database/bigsdb/. Conclusions Genomic data can be used to characterise bacterial isolates in many different ways but it can also be efficiently exploited for evolutionary or functional studies. BIGSDB represents a freely available resource that will assist the broader community in the elucidation of the structure and function of bacteria by means of a population genomics approach.
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                Author and article information

                Contributors
                Role: Editor
                Journal
                Infect Immun
                Infect Immun
                IAI
                Infection and Immunity
                American Society for Microbiology (1752 N St., N.W., Washington, DC )
                0019-9567
                1098-5522
                20 March 2023
                April 2023
                20 March 2023
                : 91
                : 4
                : e00532-22
                Affiliations
                [a ] Department of Microbiology, New York University Grossman School of Medicine, New York, New York, USA
                [b ] Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, New York, USA
                [c ] Icahn Genomics Institute, Icahn School of Medicine at Mount Sinai, New York, New York, USA
                University of Illinois at Chicago
                Author notes

                The authors declare a conflict of interest. V.J.T. has consulted for Janssen Research & Development, LLC, and has received honoraria from Novartis and Medimmune. V.J.T. is also an inventor on patents and patent applications filed by New York University, which are currently under commercial license to Janssen Biotech Inc. Janssen Biotech Inc. provides research funding and other payments associated with a licensing agreement.

                Author information
                https://orcid.org/0000-0002-7126-0489
                Article
                00532-22 iai.00532-22
                10.1128/iai.00532-22
                10112191
                36939325
                04902216-5c1c-4a67-8949-a0055b61282c
                Copyright © 2023 Anderson et al.

                This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license.

                History
                : 29 November 2022
                : 5 January 2023
                : 20 February 2023
                Page count
                Figures: 6, Tables: 2, Equations: 0, References: 65, Pages: 17, Words: 10858
                Funding
                Funded by: HHS | NIH | National Institute of Allergy and Infectious Diseases (NIAID), FundRef https://doi.org/10.13039/100000060;
                Award ID: AI105129
                Award Recipient :
                Funded by: HHS | NIH | National Institute of Allergy and Infectious Diseases (NIAID), FundRef https://doi.org/10.13039/100000060;
                Award ID: AI137336
                Award Recipient :
                Funded by: HHS | NIH | National Institute of Allergy and Infectious Diseases (NIAID), FundRef https://doi.org/10.13039/100000060;
                Award ID: AI119145
                Award Recipient :
                V.J.T. is a Burroughs Wellcome Fund Investigator in the pathogenesis of infectious diseases.
                Categories
                Molecular Pathogenesis
                iai-2022-mmpc, Special Series: 2022 Midwest Microbial Pathogenesis Conference
                microbial-pathogenesis, Microbial Pathogenesis
                Custom metadata
                April 2023

                Infectious disease & Microbiology
                mrsa,cytotoxins,leukocidins,pathogenesis,regulation,toxin
                Infectious disease & Microbiology
                mrsa, cytotoxins, leukocidins, pathogenesis, regulation, toxin

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