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      Two new species of Rhizoplaca (Lecanoraceae) from Southwest China

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          Abstract

          In this study, two new species, Rhizoplaca adpressa Y. Y. Zhang & Li S. Wang and R. auriculata Y. Y. Zhang, Li S. Wang & Printzen, are described from Southwest China, based on their morphology, phylogeny and chemistry. In phylogeny, the two new species are monophyletic, and sister to each other within Rhizoplaca chrysoleuca -complex. Rhizoplaca adpressa is characterized by its placodioid and closely adnate thallus, pale green and heavily pruinose upper surface, narrow (ca. 1 mm) and white free margin on the lower surface of marginal squamules, the absence of a lower cortex, and its basally non-constricted apothecia with orange discs that turn reddish-brown at maturity. Rhizoplaca auriculata is characterized by its squamulose to placodioid thallus, yellowish green and marginally pruinose squamules, wide (1−3 mm) and bluish-black free margin on the lower surface of marginal squamules, the absence of a lower cortex, and its basally constricted apothecia with persistently orange discs. Rhizoplaca adpressa and R. auriculata share the same secondary metabolites of usnic and placodiolic acids.

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          Most cited references27

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          MRBAYES: Bayesian inference of phylogenetic trees.

          The program MRBAYES performs Bayesian inference of phylogeny using a variant of Markov chain Monte Carlo. MRBAYES, including the source code, documentation, sample data files, and an executable, is available at http://brahms.biology.rochester.edu/software.html.
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            MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization

            Abstract This article describes several features in the MAFFT online service for multiple sequence alignment (MSA). As a result of recent advances in sequencing technologies, huge numbers of biological sequences are available and the need for MSAs with large numbers of sequences is increasing. To extract biologically relevant information from such data, sophistication of algorithms is necessary but not sufficient. Intuitive and interactive tools for experimental biologists to semiautomatically handle large data are becoming important. We are working on development of MAFFT toward these two directions. Here, we explain (i) the Web interface for recently developed options for large data and (ii) interactive usage to refine sequence data sets and MSAs.
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              PartitionFinder 2: New Methods for Selecting Partitioned Models of Evolution for Molecular and Morphological Phylogenetic Analyses

              PartitionFinder 2 is a program for automatically selecting best-fit partitioning schemes and models of evolution for phylogenetic analyses. PartitionFinder 2 is substantially faster and more efficient than version 1, and incorporates many new methods and features. These include the ability to analyze morphological datasets, new methods to analyze genome-scale datasets, new output formats to facilitate interoperability with downstream software, and many new models of molecular evolution. PartitionFinder 2 is freely available under an open source license and works on Windows, OSX, and Linux operating systems. It can be downloaded from www.robertlanfear.com/partitionfinder. The source code is available at https://github.com/brettc/partitionfinder.
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                Author and article information

                Contributors
                Journal
                MycoKeys
                MycoKeys
                11
                urn:lsid:arphahub.com:pub:C004A564-9D6A-5F9F-B058-6A3815DFE9C3
                urn:lsid:zoobank.org:pub:A4FD9303-3F01-45D9-B438-FCCFE465D2F7
                MycoKeys
                Pensoft Publishers
                1314-4057
                1314-4049
                2024
                25 January 2024
                : 101
                : 233-248
                Affiliations
                [1 ] College of Life Sciences, Anhui Normal University, 241000, Wuhu, China
                [2 ] Yunnan Key Laboratory for Fungal Diversity and Green Development, Kunming Institute of Botany, Chinese Academy of Sciences, 650201, Kunming, China
                [3 ] Senckenberg Research Institute and Natural History Museum, 60325, Frankfurt am Main, Germany
                [4 ] Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, 650201, Kunming, China
                Author notes
                Corresponding authors: Lisong Wang ( wanglisong@ 123456mail.kib.ac.cn); Xinyu Wang ( wangxinyu@ 123456mail.kib.ac.cn)

                Academic editor: Thorsten Lumbsch

                Author information
                https://orcid.org/0000-0002-0902-5066
                https://orcid.org/0000-0002-0871-0803
                https://orcid.org/0000-0003-2166-6111
                Article
                115678
                10.3897/mycokeys.101.115678
                10835803
                38313215
                07fa7a3f-41c5-430c-a657-6cd4bdeb0034
                Yanyun Zhang, Yujiao Yin, Lun Wang, Christian Printzen, Lisong Wang, Xinyu Wang

                This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                : 13 November 2023
                : 11 January 2024
                Funding
                Funded by: National Natural Science Foundation of China 501100001809 http://doi.org/10.13039/501100001809
                Second Tibetan Plateau Scientific Expedition and Research Program Anhui Provincial Education Department
                Categories
                Research Article
                Lecanoraceae
                Lichenized Fungi
                Phylogeny
                Taxonomy
                Asia

                new taxa,rhizoplacachrysoleuca-complex,r.melanophthalma-complex,saxicolous lichen

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