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      Genome downsizing, physiological novelty, and the global dominance of flowering plants

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      PLoS Biology
      Public Library of Science

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          Abstract

          The abrupt origin and rapid diversification of the flowering plants during the Cretaceous has long been considered an “abominable mystery.” While the cause of their high diversity has been attributed largely to coevolution with pollinators and herbivores, their ability to outcompete the previously dominant ferns and gymnosperms has been the subject of many hypotheses. Common among these is that the angiosperms alone developed leaves with smaller, more numerous stomata and more highly branching venation networks that enable higher rates of transpiration, photosynthesis, and growth. Yet, how angiosperms pack their leaves with smaller, more abundant stomata and more veins is unknown but linked—we show—to simple biophysical constraints on cell size. Only angiosperm lineages underwent rapid genome downsizing during the early Cretaceous period, which facilitated the reductions in cell size necessary to pack more veins and stomata into their leaves, effectively bringing actual primary productivity closer to its maximum potential. Thus, the angiosperms' heightened competitive abilities are due in no small part to genome downsizing.

          Author summary

          The angiosperms, commonly referred to as the flowering plants, are the dominant plants in most terrestrial ecosystems, but how they came to be so successful is considered one of the most profound mysteries in evolutionary biology. Prevailing hypotheses have suggested that the angiosperms rose to dominance through an increase in their maximum potential photosynthesis and whole-plant carbon gain, allowing them to outcompete the ferns and gymnosperms that had previously dominated terrestrial ecosystems. Using a combination of anatomy, cytology, and modelling of liquid water transport and CO 2 exchange between leaves and the atmosphere, we now provide strong evidence that the success and rapid spread of flowering plants around the world was the result of genome downsizing. Smaller genomes permit the construction of smaller cells that allow for greater CO 2 uptake and photosynthetic carbon gain. Genome downsizing occurred only among the angiosperms, and we propose that it was a necessary prerequisite for rapid growth rates among land plants.

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          Most cited references42

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          Maximum leaf conductance driven by CO2 effects on stomatal size and density over geologic time.

          Stomatal pores are microscopic structures on the epidermis of leaves formed by 2 specialized guard cells that control the exchange of water vapor and CO(2) between plants and the atmosphere. Stomatal size (S) and density (D) determine maximum leaf diffusive (stomatal) conductance of CO(2) (g(c(max))) to sites of assimilation. Although large variations in D observed in the fossil record have been correlated with atmospheric CO(2), the crucial significance of similarly large variations in S has been overlooked. Here, we use physical diffusion theory to explain why large changes in S necessarily accompanied the changes in D and atmospheric CO(2) over the last 400 million years. In particular, we show that high densities of small stomata are the only way to attain the highest g(cmax) values required to counter CO(2)"starvation" at low atmospheric CO(2) concentrations. This explains cycles of increasing D and decreasing S evident in the fossil history of stomata under the CO(2) impoverished atmospheres of the Permo-Carboniferous and Cenozoic glaciations. The pattern was reversed under rising atmospheric CO(2) regimes. Selection for small S was crucial for attaining high g(cmax) under falling atmospheric CO(2) and, therefore, may represent a mechanism linking CO(2) and the increasing gas-exchange capacity of land plants over geologic time.
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            Evolutionary and Ecological Aspects of Photosynthetic Pathway Variation

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              The mechanical diversity of stomata and its significance in gas-exchange control.

              Given that stomatal movement is ultimately a mechanical process and that stomata are morphologically and mechanically diverse, we explored the influence of stomatal mechanical diversity on leaf gas exchange and considered some of the constraints. Mechanical measurements were conducted on the guard cells of four different species exhibiting different stomatal morphologies, including three variants on the classical "kidney" form and one "dumb-bell" type; this information, together with gas-exchange measurements, was used to model and compare their respective operational characteristics. Based on evidence from scanning electron microscope images of cryo-sectioned leaves that were sampled under full sun and high humidity and from pressure probe measurements of the stomatal aperture versus guard cell turgor relationship at maximum and zero epidermal turgor, it was concluded that maximum stomatal apertures (and maximum leaf diffusive conductance) could not be obtained in at least one of the species (the grass Triticum aestivum) without a substantial reduction in subsidiary cell osmotic (and hence turgor) pressure during stomatal opening to overcome the large mechanical advantage of subsidiary cells. A mechanism for this is proposed, with a corollary being greatly accelerated stomatal opening and closure. Gas-exchange measurements on T. aestivum revealed the capability of very rapid stomatal movements, which may be explained by the unique morphology and mechanics of its dumb-bell-shaped stomata coupled with "see-sawing" of osmotic and turgor pressure between guard and subsidiary cells during stomatal opening or closure. Such properties might underlie the success of grasses.
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                Author and article information

                Contributors
                Role: ConceptualizationRole: Data curationRole: Formal analysisRole: InvestigationRole: MethodologyRole: Writing – original draftRole: Writing – review & editing
                Role: Data curationRole: Formal analysisRole: InvestigationRole: MethodologyRole: Writing – original draftRole: Writing – review & editing
                Role: Academic Editor
                Journal
                PLoS Biol
                PLoS Biol
                plos
                plosbiol
                PLoS Biology
                Public Library of Science (San Francisco, CA USA )
                1544-9173
                1545-7885
                11 January 2018
                January 2018
                11 January 2018
                : 16
                : 1
                : e2003706
                Affiliations
                [1 ] Department of Biology, San Francisco State University, San Francisco, California, United States of America
                [2 ] School of Forestry and Environmental Studies, Yale University, New Haven, Connecticut, United States of America
                University of Cambridge, United Kingdom of Great Britain and Northern Ireland
                Author notes

                The authors have declared that no competing interests exist.

                Author information
                http://orcid.org/0000-0002-4990-580X
                Article
                pbio.2003706
                10.1371/journal.pbio.2003706
                5764239
                29324757
                0cd12529-147e-45aa-8215-6e0663792727
                © 2018 Simonin, Roddy

                This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                : 13 July 2017
                : 8 December 2017
                Page count
                Figures: 4, Tables: 1, Pages: 15
                Funding
                The authors received no specific funding for this work.
                Categories
                Short Reports
                Biology and Life Sciences
                Organisms
                Eukaryota
                Plants
                Flowering Plants
                Biology and Life Sciences
                Plant Science
                Plant Anatomy
                Leaves
                Stomata
                Biology and Life Sciences
                Plant Science
                Plant Anatomy
                Stem Anatomy
                Stomata
                Biology and Life Sciences
                Organisms
                Eukaryota
                Plants
                Gymnosperms
                Biology and Life Sciences
                Plant Science
                Plant Anatomy
                Leaves
                Leaf Veins
                Biology and Life Sciences
                Genetics
                Genomics
                Plant Genomics
                Biology and Life Sciences
                Biotechnology
                Plant Biotechnology
                Plant Genomics
                Biology and Life Sciences
                Plant Science
                Plant Biotechnology
                Plant Genomics
                Biology and Life Sciences
                Genetics
                Plant Genetics
                Plant Genomics
                Biology and Life Sciences
                Plant Science
                Plant Genetics
                Plant Genomics
                Biology and Life Sciences
                Organisms
                Eukaryota
                Plants
                Ferns
                Biology and Life Sciences
                Evolutionary Biology
                Evolutionary Systematics
                Phylogenetics
                Biology and Life Sciences
                Taxonomy
                Evolutionary Systematics
                Phylogenetics
                Computer and Information Sciences
                Data Management
                Taxonomy
                Evolutionary Systematics
                Phylogenetics
                Biology and Life Sciences
                Plant Science
                Plant Anatomy
                Leaves
                Custom metadata
                All relevant data are within the paper and its Supporting Information files.

                Life sciences
                Life sciences

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