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      An integrative framework to reevaluate the Neotropical catfish genus Guyanancistrus (Siluriformes: Loricariidae) with particular emphasis on the Guyanancistrus brevispinis complex

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          Abstract

          Characterizing and naming species becomes more and more challenging due to the increasing difficulty of accurately delineating specific bounderies. In this context, integrative taxonomy aims to delimit taxonomic units by leveraging the complementarity of multiple data sources (geography, morphology, genetics, etc.). However, while the theoretical framework of integrative taxonomy has been explicitly stated, methods for the simultaneous analysis of multiple data sets are poorly developed and in many cases different information sources are still explored successively. Multi-table methods developed in the field of community ecology provide such an intregrative framework. In particular, multiple co-inertia analysis is flexible enough to allow the integration of morphological, distributional, and genetic data in the same analysis. We have applied this powerfull approach to delimit species boundaries in a group of poorly differentiated catfishes belonging to the genus Guyanancistrus from the Guianas region of northeastern South America. Because the species G. brevispinis has been claimed to be a species complex consisting of five species, particular attention was paid to taxon. Separate analyses indicated the presence of eight distinct species of Guyanancistrus, including five new species and one new genus. However, none of the preliminary analyses revealed different lineages within G. brevispinis, and the multi-table analysis revealed three intraspecific lineages. After taxonomic clarifications and description of the new genus, species and subspecies, a reappraisal of the biogeography of Guyanancistrus members was performed. This analysis revealed three distinct dispersals from the Upper reaches of Amazonian tributaries toward coastal rivers of the Eastern Guianas Ecoregion. The central role played by the Maroni River, as gateway from the Amazon basin, was confirmed. The Maroni River was also found to be a center of speciation for Guyanancistrus (with three species and two subspecies), as well as a source of dispersal of G. brevispinis toward the other main basins of the Eastern Guianas.

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          Inference from Iterative Simulation Using Multiple Sequences

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            MRBAYES: Bayesian inference of phylogenetic trees.

            The program MRBAYES performs Bayesian inference of phylogeny using a variant of Markov chain Monte Carlo. MRBAYES, including the source code, documentation, sample data files, and an executable, is available at http://brahms.biology.rochester.edu/software.html.
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              Cryptic species as a window on diversity and conservation.

              The taxonomic challenge posed by cryptic species (two or more distinct species classified as a single species) has been recognized for nearly 300 years, but the advent of relatively inexpensive and rapid DNA sequencing has given biologists a new tool for detecting and differentiating morphologically similar species. Here, we synthesize the literature on cryptic and sibling species and discuss trends in their discovery. However, a lack of systematic studies leaves many questions open, such as whether cryptic species are more common in particular habitats, latitudes or taxonomic groups. The discovery of cryptic species is likely to be non-random with regard to taxon and biome and, hence, could have profound implications for evolutionary theory, biogeography and conservation planning.
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                Author and article information

                Contributors
                Role: Data curationRole: InvestigationRole: Writing – original draftRole: Writing – review & editing
                Role: InvestigationRole: Writing – original draft
                Role: ConceptualizationRole: Data curationRole: Formal analysisRole: InvestigationRole: MethodologyRole: Project administrationRole: SoftwareRole: SupervisionRole: ValidationRole: Writing – original draftRole: Writing – review & editing
                Role: Editor
                Journal
                PLoS One
                PLoS ONE
                plos
                plosone
                PLoS ONE
                Public Library of Science (San Francisco, CA USA )
                1932-6203
                3 January 2018
                2018
                : 13
                : 1
                : e0189789
                Affiliations
                [1 ] Natural History Museum, Department of Herpetology and Ichthyology, Geneva, Switzerland
                [2 ] Center for Agricultural Research in Suriname (CELOS) and Department of Biology, Anton de Kom University of Suriname, Paramaribo, Suriname
                SOUTHWEST UNIVERSITY, CHINA
                Author notes

                Competing Interests: The authors have declared that no competing interests exist.

                Author information
                http://orcid.org/0000-0002-8186-8914
                Article
                PONE-D-17-17885
                10.1371/journal.pone.0189789
                5752014
                29298344
                102d6a0c-8246-495b-b573-ea752cd586d6
                © 2018 Fisch-Muller et al

                This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                : 12 May 2017
                : 3 December 2017
                Page count
                Figures: 20, Tables: 6, Pages: 66
                Funding
                Funded by: Georges and Antoine Claraz Foundation
                Award Recipient :
                Funded by: Georges and Antoine Claraz Foundation
                Award Recipient :
                Funded by: Académie Suisse des Sciences Naturelles (ScNat)
                Award Recipient :
                Funded by: Constantin Topali Found
                Award Recipient :
                Funded by: Département de la Culture et du Sport
                Funded by: INRA of Rennes
                Award Recipient :
                For their financial support, we acknowledge the Georges and Antoine Claraz Foundation for field missions in Suriname in 2001 and 2008, and in French Guiana in 2006; the Académie Suisse des Sciences Naturelles (ScNat) for the mission in French Guiana 2006; the Constantin Topali Found for the acquisition of lab material in 2009; the Département de la Culture et du Sport for the mission in Suriname in 2014. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
                Categories
                Research Article
                Research and Analysis Methods
                Imaging Techniques
                Morphometry
                Earth Sciences
                Marine and Aquatic Sciences
                Bodies of Water
                Rivers
                Ecology and Environmental Sciences
                Aquatic Environments
                Freshwater Environments
                Rivers
                Earth Sciences
                Marine and Aquatic Sciences
                Aquatic Environments
                Freshwater Environments
                Rivers
                Biology and Life Sciences
                Evolutionary Biology
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                Speciation
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                Custom metadata
                All sequences and specimens data are available from the GenBank and BOLD databases (accession numbers provided in Table 1). All other relevant data are included within the paper and its Supporting Information files.

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