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      Megabenthic communities of the Ligurian deep continental shelf and shelf break (NW Mediterranean Sea)

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          Abstract

          The Ligurian Sea is one of the most studied Mediterranean basins. Since the beginning of the last century, many research expeditions have characterized its benthic and pelagic fauna through scuba diving and trawl surveys. However, a large knowledge gap exists about the composition of benthic communities extending into the so-called mesophotic or twilight depth range, currently under intense pressure from commercial and recreational fishing. A series of visual surveys, carried out by means of remotely operated vehicles between 2012 and 2018, were conducted along the Ligurian deep continental shelf and shelf break, between 30 and 210 m depth, in order to characterize the main benthic biocoenoses dwelling at this depth range and to determine the most relevant environmental factors that explain their spatial distribution. Deep circalittoral communities of the Ligurian Sea were represented by a mixture of species belonging to the deepest extension of shallow-water habitats and deep circalittoral ones. Twelve major biocoenoses were identified, each one characterized by specific preferences in depth range, substrate type and seabed slope. Those biocoenoses included gorgonian and hydrozoan forests, dense keratose sponge grounds, Dendrophyllia cornigera gardens, bryozoan beds and soft-bottom meadows of sabellid polychaetes and soft-corals. Other less common aggregations included six forests of black corals and two populations of Paramuricea macrospina. A georeferenced database has been created in order to provide information to managers and stakeholders about the location of the identified communities and high-diversity areas, aiming to facilitate sustainable long-term conservation of the Ligurian benthic ecosystem.

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          Circulation in the Western Mediterranean Sea

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            Aerobic proteobacterial methylotrophs in Movile Cave: genomic and metagenomic analyses

            Background Movile Cave (Mangalia, Romania) is a unique ecosystem where the food web is sustained by microbial primary production, analogous to deep-sea hydrothermal vents. Specifically, chemoautotrophic microbes deriving energy from the oxidation of hydrogen sulphide and methane form the basis of the food web. Results Here, we report the isolation of the first methane-oxidizing bacterium from the Movile Cave ecosystem, Candidatus Methylomonas sp. LWB, a new species and representative of Movile Cave microbial mat samples. While previous research has suggested a prevalence of anoxic conditions in deeper lake water and sediment, using small-scale shotgun metagenome sequencing, we show that metabolic genes encoding enzymes for aerobic methylotrophy are prevalent in sediment metagenomes possibly indicating the presence of microoxic conditions. Moreover, this study also indicates that members within the family Gallionellaceae (Sideroxydans and Gallionella) were the dominant taxa within the sediment microbial community, thus suggesting a major role for microaerophilic iron-oxidising bacteria in nutrient cycling within the Movile Cave sediments. Conclusions In this study, based on phylogenetic and metabolic gene surveys of metagenome sequences, the possibility of aerobic microbial processes (i.e., methylotrophy and iron oxidation) within the sediment is indicated. We also highlight significant gaps in our knowledge on biogeochemical cycles within the Movile Cave ecosystem, and the need to further investigate potential feedback mechanisms between microbial communities in both lake sediment and lake water. Electronic supplementary material The online version of this article (10.1186/s40168-017-0383-2) contains supplementary material, which is available to authorized users.
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              Ecology of mesophotic coral reefs

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                Author and article information

                Contributors
                Role: ConceptualizationRole: Data curationRole: Formal analysisRole: InvestigationRole: Writing – original draftRole: Writing – review & editing
                Role: ConceptualizationRole: Formal analysisRole: MethodologyRole: SoftwareRole: SupervisionRole: ValidationRole: Writing – review & editing
                Role: Data curationRole: InvestigationRole: Writing – review & editing
                Role: Funding acquisitionRole: Project administrationRole: ResourcesRole: ValidationRole: Writing – review & editing
                Role: Data curationRole: InvestigationRole: SupervisionRole: Writing – review & editing
                Role: InvestigationRole: ResourcesRole: Software
                Role: ConceptualizationRole: Funding acquisitionRole: InvestigationRole: MethodologyRole: Project administrationRole: SupervisionRole: ValidationRole: Writing – review & editing
                Role: Editor
                Journal
                PLoS One
                PLoS ONE
                plos
                plosone
                PLoS ONE
                Public Library of Science (San Francisco, CA USA )
                1932-6203
                17 October 2019
                2019
                : 14
                : 10
                : e0223949
                Affiliations
                [1 ] Dipartimento di Scienze della Terra, dell'Ambiente e della Vita, Università degli Studi di Genova, Genova, Italy
                [2 ] Okeanos Research Centre, Universidade dos Açores, Departamento de Oceanografia e Pesca, Horta, Portugal
                [3 ] IMAR Instituto do Mar, Universidade dos Açores, Departamento de Oceanografia e Pesca, Horta, Portugal
                [4 ] Istituto Superiore per la Protezione e la Ricerca Ambientale, Roma, Italy
                Australian Bureau of Agricultural and Resource Economics and Sciences, AUSTRALIA
                Author notes

                Competing Interests: The authors have declared that no competing interests exist.

                Author information
                http://orcid.org/0000-0003-3256-4540
                http://orcid.org/0000-0002-0025-9376
                http://orcid.org/0000-0003-4038-5673
                Article
                PONE-D-19-03759
                10.1371/journal.pone.0223949
                6797210
                31622402
                159ce7b8-be1c-42b0-9f21-e6469addc4ea
                © 2019 Enrichetti et al

                This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                : 7 February 2019
                : 2 October 2019
                Page count
                Figures: 10, Tables: 3, Pages: 30
                Funding
                Funded by: Ministero dell'Ambiente e della Tutela del Territorio e del Mare (MATTM)
                Award Recipient :
                Funded by: Agenzia Regionale per la Protezione dell'Ambiente Ligure
                Award ID: DG n. 127/2015, n. 109/2016, n. 110/2017
                Award Recipient :
                The present study has been funded by Ministero dell'Ambiente e della Tutela del Territorio e del Mare (GB) and Agenzia Regionale per la Protezione dell'Ambiente Ligure (GB, DG n. 127/2015, n. 109/2016, n. 110/2017, within the Marine Strategy Framework Monitoring Program, ARPAL n. 177/2014). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
                Categories
                Research Article
                Biology and Life Sciences
                Organisms
                Eukaryota
                Animals
                Invertebrates
                Sponges
                Biology and Life Sciences
                Marine Biology
                Corals
                Earth Sciences
                Marine and Aquatic Sciences
                Marine Biology
                Corals
                Biology and Life Sciences
                Ecology
                Ecological Metrics
                Species Diversity
                Ecology and Environmental Sciences
                Ecology
                Ecological Metrics
                Species Diversity
                Biology and Life Sciences
                Population Biology
                Population Dynamics
                Geographic Distribution
                Biology and Life Sciences
                Ecology
                Ecosystems
                Forests
                Ecology and Environmental Sciences
                Ecology
                Ecosystems
                Forests
                Ecology and Environmental Sciences
                Terrestrial Environments
                Forests
                Biology and Life Sciences
                Ecology
                Biodiversity
                Ecology and Environmental Sciences
                Ecology
                Biodiversity
                Earth sciences
                Marine and aquatic sciences
                Bodies of water
                Oceans
                Mediterranean Sea
                Biology and Life Sciences
                Organisms
                Eukaryota
                Animals
                Animal Types
                Large Animals
                Biology and Life Sciences
                Zoology
                Animal Types
                Large Animals
                Custom metadata
                All relevant data are within the manuscript and its Supporting Information files.

                Uncategorized
                Uncategorized

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