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      Genomic Database Analysis of Uterine Leiomyosarcoma Mutational Profile

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          Abstract

          Uterine Leiomyosarcoma (uLMS) is by far the most common type of uterine sarcoma, characterized by an aggressive clinical course, a heterogeneous genetic profile and a very scarce response to cytotoxic chemotherapy. The genetic make-up of uLMS is an area of active study that could provide essential cues for the development of new therapeutic approaches. A total of 216 patients with uLMS from cBioPortal and AACR-GENIE databases were included in the study. The vast majority of patients (81%) carried at least one mutation in either TP53, RB1, ATRX or PTEN. The most frequently mutated gene was TP53, with 61% of the patients harboring at least one mutation, followed by RB1 at 48%. PTEN alteration was more frequent in metastases than in primary lesions, consistent with a later acquisition during tumor progression. There was a significant trend for TP53 and RB1 mutations to occur together, while both TP53 and RB1 were mutually exclusive with respect to CDKN2A/B inactivation. Overall survival did not show significant correlation with the mutational status, even if RB1 mutation emerged as a favorable prognostic factor in the TP53-mutant subgroup. This comprehensive analysis shows that uLMS is driven almost exclusively by the inactivation of tumor suppressor genes and suggests that future therapeutic strategies should be directed at targeting the main genetic drivers of uLMS oncogenesis.

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          Most cited references28

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          Integrative analysis of complex cancer genomics and clinical profiles using the cBioPortal.

          The cBioPortal for Cancer Genomics (http://cbioportal.org) provides a Web resource for exploring, visualizing, and analyzing multidimensional cancer genomics data. The portal reduces molecular profiling data from cancer tissues and cell lines into readily understandable genetic, epigenetic, gene expression, and proteomic events. The query interface combined with customized data storage enables researchers to interactively explore genetic alterations across samples, genes, and pathways and, when available in the underlying data, to link these to clinical outcomes. The portal provides graphical summaries of gene-level data from multiple platforms, network visualization and analysis, survival analysis, patient-centric queries, and software programmatic access. The intuitive Web interface of the portal makes complex cancer genomics profiles accessible to researchers and clinicians without requiring bioinformatics expertise, thus facilitating biological discoveries. Here, we provide a practical guide to the analysis and visualization features of the cBioPortal for Cancer Genomics.
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            p53: 800 million years of evolution and 40 years of discovery

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              MED12, the mediator complex subunit 12 gene, is mutated at high frequency in uterine leiomyomas.

              Uterine leiomyomas, or fibroids, are benign tumors that affect millions of women worldwide and that can cause considerable morbidity. To study the genetic basis of this tumor type, we examined 18 uterine leiomyomas derived from 17 different patients by exome sequencing and identified tumor-specific mutations in the mediator complex subunit 12 (MED12) gene in 10. Through analysis of 207 additional tumors, we determined that MED12 is altered in 70% (159 of 225) of tumors from a total of 80 patients. The Mediator complex is a 26-subunit transcriptional regulator that bridges DNA regulatory sequences to the RNA polymerase II initiation complex. All mutations resided in exon 2, suggesting that aberrant function of this region of MED12 contributes to tumorigenesis.
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                Author and article information

                Journal
                Cancers (Basel)
                Cancers (Basel)
                cancers
                Cancers
                MDPI
                2072-6694
                31 July 2020
                August 2020
                : 12
                : 8
                : 2126
                Affiliations
                [1 ]Department of Morphology, Surgery and Experimental Medicine, University of Ferrara, 44121 Ferrara, Italy; annalisa.astolfi@ 123456unife.it (A.A.); paola.secchiero@ 123456unife.it (P.S.)
                [2 ]Medical Oncology Unit, S.Orsola-Malpighi University Hospital, 40138 Bologna, Italy
                [3 ]“Giorgio Prodi” Cancer Research Center, University of Bologna, 40138 Bologna, Italy; valentina.indio2@ 123456unibo.it (V.I.); angela.schipani2@ 123456unibo.it (A.S.); maria.pantaleo@ 123456unibo.it (M.A.P.)
                [4 ]Department of Experimental, Diagnostic and Specialty Medicine, S.Orsola-Malpighi University Hospital, University of Bologna, 40138 Bologna, Italy; rizzo.alessandro179@ 123456gmail.com
                [5 ]Gynecologic Oncology Unit, S.Orsola-Malpighi University Hospital, 40138 Bologna, Italy; myriam.perrone@ 123456aosp.bo.it (A.M.P.); pierandrea.deiaco@ 123456unibo.it (P.D.I.)
                [6 ]Pathology Unit, S.Orsola-Malpighi University Hospital, 40138 Bologna, Italy; mariagiulia.pirini@ 123456aosp.bo.it (M.G.P.); antonio.deleo@ 123456unibo.it (A.D.L.)
                [7 ]Biosciences Laboratory, Istituto Scientifico Romagnolo per lo Studio e la Cura dei Tumori (IRST) IRCCS, 47014 Meldola, Italy; milena.urbini@ 123456irst.emr.it
                Author notes
                Author information
                https://orcid.org/0000-0002-2732-0747
                https://orcid.org/0000-0002-8854-3821
                https://orcid.org/0000-0002-5257-8678
                https://orcid.org/0000-0003-3140-4772
                https://orcid.org/0000-0002-3761-5135
                https://orcid.org/0000-0002-3364-9098
                Article
                cancers-12-02126
                10.3390/cancers12082126
                7464219
                32751892
                1cd834d0-aa3b-4486-a51c-d020967931bf
                © 2020 by the authors.

                Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license ( http://creativecommons.org/licenses/by/4.0/).

                History
                : 28 June 2020
                : 28 July 2020
                Categories
                Article

                uterine leiomyosarcoma,ulms,genome analysis,tp53,atrx,rb1,pten
                uterine leiomyosarcoma, ulms, genome analysis, tp53, atrx, rb1, pten

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