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      Forest‐permafrost feedbacks and glacial refugia help explain the unequal distribution of larch across continents

      1 , 2 , 1 , 3 , 1 , 1 , 2 , 3
      Journal of Biogeography
      Wiley

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          Abstract

          Aim

          The continental‐scale distribution of plant functional types, such as evergreen and summergreen needle‐leaf forest, is assumed to be determined by contemporary climate. However, the distribution of summergreen needle‐leaf forest of larch ( Larix Mill.) differs markedly between the continents, despite relatively similar climatic conditions. The reasons for these differences are little understood. Our aim is to identify potential triggers and drivers of the current distribution patterns by comparing species' bioclimatic niches, glacial refugia and postglacial recolonization patterns.

          Location

          Northern hemisphere.

          Taxon

          Species of the genus Larix (Mill.).

          Methods

          We compare species distribution and dominance using species ranges and sites of dominance, as well as their occurrence on modelled permafrost extent, and active layer thickness (ALT). We compare the bioclimatic niches and calculate the niche overlap between species, using the same data in addition to modern climate data. We synthesize pollen, macrofossil and ancient DNA palaeo‐evidence of past Larix occurrences of the last 60,000 years and track differences in distribution patterns through time.

          Results

          Bioclimatic niches show large overlaps between Asian larch species and American Larix laricina. The distribution across various degrees of permafrost extent is distinctly different for Asian L. gmelinii and L. cajanderi compared to the other species, whereas the distribution on different depths of ALT is more similar among Asian and American species. Northern glacial refugia for Larix are only present in eastern Asia and Alaska.

          Main Conclusion

          The dominance of summergreen larches in Asia, where evergreen conifers dominate most of the rest of the boreal forests, is dependent on the interaction of several factors which allows Asian L. gmelinii and L. cajanderi to dominate where these factors coincide . These factors include the early postglacial spread out of northern glacial refugia in the absence of competitors as well as a positive feedback mechanism between frozen ground and forest.

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          Most cited references97

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          WorldClim 2: new 1-km spatial resolution climate surfaces for global land areas

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            A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

            Advances in next generation technologies have driven the costs of DNA sequencing down to the point that genotyping-by-sequencing (GBS) is now feasible for high diversity, large genome species. Here, we report a procedure for constructing GBS libraries based on reducing genome complexity with restriction enzymes (REs). This approach is simple, quick, extremely specific, highly reproducible, and may reach important regions of the genome that are inaccessible to sequence capture approaches. By using methylation-sensitive REs, repetitive regions of genomes can be avoided and lower copy regions targeted with two to three fold higher efficiency. This tremendously simplifies computationally challenging alignment problems in species with high levels of genetic diversity. The GBS procedure is demonstrated with maize (IBM) and barley (Oregon Wolfe Barley) recombinant inbred populations where roughly 200,000 and 25,000 sequence tags were mapped, respectively. An advantage in species like barley that lack a complete genome sequence is that a reference map need only be developed around the restriction sites, and this can be done in the process of sample genotyping. In such cases, the consensus of the read clusters across the sequence tagged sites becomes the reference. Alternatively, for kinship analyses in the absence of a reference genome, the sequence tags can simply be treated as dominant markers. Future application of GBS to breeding, conservation, and global species and population surveys may allow plant breeders to conduct genomic selection on a novel germplasm or species without first having to develop any prior molecular tools, or conservation biologists to determine population structure without prior knowledge of the genome or diversity in the species.
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              ggmap: Spatial Visualization with ggplot2

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                Author and article information

                Contributors
                (View ORCID Profile)
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                Journal
                Journal of Biogeography
                Journal of Biogeography
                Wiley
                0305-0270
                1365-2699
                October 2022
                September 06 2022
                October 2022
                : 49
                : 10
                : 1825-1838
                Affiliations
                [1 ] Polar Terrestrial Environmental Systems Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research Potsdam Germany
                [2 ] Institute of Biochemistry and Biology University of Potsdam Potsdam Germany
                [3 ] Institute of Environmental Science and Geography University of Potsdam Potsdam Germany
                Article
                10.1111/jbi.14456
                2cb1db51-6c45-49f1-a552-ab5cfa500fbf
                © 2022

                http://creativecommons.org/licenses/by-nc/4.0/

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