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      The effect of mutational robustness on the evolvability of multicellular organisms and eukaryotic cells

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          Abstract

          Canalization involves mutational robustness, the lack of phenotypic change as a result of genetic mutations. Given the large divergence in phenotype across species, understanding the relationship between high robustness and evolvability has been of interest to both theorists and experimentalists. Although canalization was originally proposed in the context of multicellular organisms, the effect of multicellularity and other classes of hierarchical organization on evolvability has not been considered by theoreticians. We address this issue using a Boolean population model with explicit representation of an environment in which individuals with explicit genotype and a hierarchical phenotype representing multicellularity evolve. Robustness is described by a single real number between zero and one which emerges from the genotype–phenotype map. We find that high robustness is favoured in constant environments, and lower robustness is favoured after environmental change. Multicellularity and hierarchical organization severely constrain robustness: peak evolvability occurs at an absolute level of robustness of about 0.99 compared with values of about 0.5 in a classical neutral network model. These constraints result in a sharp peak of evolvability in which the maximum is set by the fact that the fixation of adaptive mutations becomes more improbable as robustness decreases. When robustness is put under genetic control, robustness levels leading to maximum evolvability are selected for, but maximal relative fitness appears to require recombination.

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          A logical calculus of the ideas immanent in nervous activity

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            A gene complex controlling segmentation in Drosophila.

            E B Lewis (1978)
            The bithorax gene complex in Drosophila contains a minimum of eight genes that seem to code for substances controlling levels of thoracic and abdominal development. The state of repression of at least four of these genes is controlled by cis-regulatory elements and a separate locus (Polycomb) seems to code for a repressor of the complex. The wild-type and mutant segmentation patterns are consistent with an antero-posterior gradient in repressor concentration along the embryo and a proximo-distal gradient along the chromosome in the affinities for repressor of each gene's cis-regulatory element.
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              The effect of deleterious mutations on neutral molecular variation.

              Selection against deleterious alleles maintained by mutation may cause a reduction in the amount of genetic variability at linked neutral sites. This is because a new neutral variant can only remain in a large population for a long period of time if it is maintained in gametes that are free of deleterious alleles, and hence are not destined for rapid elimination from the population by selection. Approximate formulas are derived for the reduction below classical neutral values resulting from such background selection against deleterious mutations, for the mean times to fixation and loss of new mutations, nucleotide site diversity, and number of segregating sites. These formulas apply to random-mating populations with no genetic recombination, and to populations reproducing exclusively asexually or by self-fertilization. For a given selection regime and mating system, the reduction is an exponential function of the total mutation rate to deleterious mutations for the section of the genome involved. Simulations show that the effect decreases rapidly with increasing recombination frequency or rate of outcrossing. The mean time to loss of new neutral mutations and the total number of segregating neutral sites are less sensitive to background selection than the other statistics, unless the population size is of the order of a hundred thousand or more. The stationary distribution of allele frequencies at the neutral sites is correspondingly skewed in favor of rare alleles, compared with the classical neutral result. Observed reductions in molecular variation in low recombination genomic regions of sufficiently large size, for instance in the centromere-proximal regions of Drosophila autosomes or in highly selfing plant populations, may be partly due to background selection against deleterious mutations.
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                Author and article information

                Journal
                8809954
                8282
                J Evol Biol
                J Evol Biol
                Journal of evolutionary biology
                1010-061X
                1420-9101
                15 June 2023
                June 2023
                31 May 2023
                02 July 2023
                : 36
                : 6
                : 906-924
                Affiliations
                [1 ]Department of Ecology & Evolution, University of Chicago, Chicago, Illinois, USA
                [2 ]Department of Genome Sciences, University of Washington, Seattle, Washington, USA
                [3 ]Institute for Genomics & Systems Biology, Chicago, Illinois, USA
                [4 ]Department of Statistics, University of Chicago, Chicago, Illinois, USA
                [5 ]Department of Molecular Genetics and Cell Biology, University of Chicago, Chicago, Illinois, USA
                Author notes

                AUTHOR CONTRIBUTIONS

                Pengyao Jiang: Conceptualization (equal); data curation (lead); formal analysis (lead); investigation (equal); methodology (equal); project administration (equal); software (lead); supervision (equal); validation (lead); visualization (lead); writing - original draft (lead); writing - review and editing (equal). John Reinitz: Conceptualization (equal); funding acquisition (lead); investigation (equal); methodology (equal); project administration (equal); resources (lead); supervision (equal); writing - review and editing (equal). Martin Kreitman: Supervision (supporting); writing - original draft (supporting).

                Correspondence Pengyao Jiang and John Reinitz, Department of Ecology & Evolution, University of Chicago, IL 60637, USA. pyjiang2@ 123456gmail.com and reinitz@ 123456galton.uchicago.edu
                Author information
                http://orcid.org/0000-0002-7797-6031
                http://orcid.org/0000-0002-6314-9510
                Article
                NIHMS1906080
                10.1111/jeb.14180
                10315174
                37256290
                311ed1f1-72a8-4f44-969e-05fafc174cee

                This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.

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                Categories
                Article

                Evolutionary Biology
                adaptation,boolean model,canalization,eukaryotes,hierarchical phenotype,neural net,population simulations,wright–fisher

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