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      Digital signaling network drives the assembly of the AIM2-ASC inflammasome

      , ,
      Proceedings of the National Academy of Sciences
      Proceedings of the National Academy of Sciences

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          Abstract

          <p id="d7498232e184">The complexity of biological signaling pathways parallels the design of modern electronic circuits. The AIM2-ASC inflammasome is a filamentous signaling platform that plays an essential role in defense against foreign dsDNA arising from invading pathogens. Currently, the design principles of the AIM2-ASC “signaling circuit” remain poorly understood. Here, we found that the assembly of the AIM2-ASC inflammasome filters short dsDNA as noise at each signaling step. dsDNA induces hysteresis, and the assembly generates multistage, virtually infinite signal amplification. Moreover, an array of positive feedback loops reinforces the assembly. Together with a quantitative model of the assembly pathway, we demonstrate that an ultrasensitive digital circuit drives the assembly of the AIM2-ASC inflammasome on foreign dsDNA. </p><p class="first" id="d7498232e187">The AIM2-ASC inflammasome is a filamentous signaling platform essential for mounting host defense against cytoplasmic dsDNA arising not only from invading pathogens but also from damaged organelles. Currently, the design principles of its underlying signaling network remain poorly understood at the molecular level. We show here that longer dsDNA is more effective in inducing AIM2 assembly, its self-propagation, and downstream ASC polymerization. This observation is related to the increased probability of forming the base of AIM2 filaments, and indicates that the assembly discerns small dsDNA as noise at each signaling step. Filaments assembled by receptor AIM2, downstream ASC, and their joint complex all persist regardless of dsDNA, consequently generating sustained signal amplification and hysteresis. Furthermore, multiple positive feedback loops reinforce the assembly, as AIM2 and ASC filaments accelerate the assembly of nascent AIM2 with or without dsDNA. Together with a quantitative model of the assembly, our results indicate that an ultrasensitive digital circuit drives the assembly of the AIM2-ASC inflammasome. </p>

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          Actin, a central player in cell shape and movement.

          The protein actin forms filaments that provide cells with mechanical support and driving forces for movement. Actin contributes to biological processes such as sensing environmental forces, internalizing membrane vesicles, moving over surfaces, and dividing the cell in two. These cellular activities are complex; they depend on interactions of actin monomers and filaments with numerous other proteins. Here, we present a summary of the key questions in the field and suggest how those questions might be answered. Understanding actin-based biological phenomena will depend on identifying the participating molecules and defining their molecular mechanisms. Comparisons of quantitative measurements of reactions in live cells with computer simulations of mathematical models will also help generate meaningful insights.
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            HIN-200 proteins regulate caspase activation in response to foreign cytoplasmic DNA.

            The mammalian innate immune system is activated by foreign nucleic acids. Detection of double-stranded DNA (dsDNA) in the cytoplasm triggers characteristic antiviral responses and macrophage cell death. Cytoplasmic dsDNA rapidly activated caspase 3 and caspase 1 in bone marrow-derived macrophages. We identified the HIN-200 family member and candidate lupus susceptibility factor, p202, as a dsDNA binding protein that bound stably and rapidly to transfected DNA. Knockdown studies showed p202 to be an inhibitor of DNA-induced caspase activation. Conversely, the related pyrin domain-containing HIN-200 factor, AIM2 (p210), was required for caspase activation by cytoplasmic dsDNA. This work indicates that HIN-200 proteins can act as pattern recognition receptors mediating responses to cytoplasmic dsDNA.
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              Digital signaling and hysteresis characterize ras activation in lymphoid cells.

              Activation of Ras proteins underlies functional decisions in diverse cell types. Two molecules, RasGRP and SOS, catalyze Ras activation in lymphocytes. Binding of active Ras to SOS' allosteric pocket markedly increases SOS' activity establishing a positive feedback loop for SOS-mediated Ras activation. Integrating in silico and in vitro studies, we demonstrate that digital signaling in lymphocytes (cells are "on" or "off") is predicated upon feedback regulation of SOS. SOS' feedback loop leads to hysteresis in the dose-response curve, which can enable a capacity to sustain Ras activation as stimuli are withdrawn and exhibit "memory" of past encounters with antigen. Ras activation via RasGRP alone is analog (graded increase in amplitude with stimulus). We describe how complementary analog (RasGRP) and digital (SOS) pathways act on Ras to efficiently convert analog input to digital output. Numerous predictions regarding the impact of our findings on lymphocyte function and development are noted.
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                Author and article information

                Journal
                Proceedings of the National Academy of Sciences
                Proc Natl Acad Sci USA
                Proceedings of the National Academy of Sciences
                0027-8424
                1091-6490
                February 27 2018
                February 27 2018
                February 27 2018
                February 12 2018
                : 115
                : 9
                : E1963-E1972
                Article
                10.1073/pnas.1712860115
                5834677
                29440442
                31b1c2fb-0e9b-48c6-9140-982533e44f37
                © 2018

                Free to read

                http://www.pnas.org/site/misc/userlicense.xhtml

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