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      Co-fibrillogenesis of Wild-type and D76N β 2-Microglobulin : THE CRUCIAL ROLE OF FIBRILLAR SEEDS *

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          Abstract

          The amyloidogenic variant of β 2-microglobulin, D76N, can readily convert into genuine fibrils under physiological conditions and primes in vitro the fibrillogenesis of the wild-type β 2-microglobulin. By Fourier transformed infrared spectroscopy, we have demonstrated that the amyloid transformation of wild-type β 2-microglobulin can be induced by the variant only after its complete fibrillar conversion. Our current findings are consistent with preliminary data in which we have shown a seeding effect of fibrils formed from D76N or the natural truncated form of β 2-microglobulin lacking the first six N-terminal residues. Interestingly, the hybrid wild-type/variant fibrillar material acquired a thermodynamic stability similar to that of homogenous D76N β 2-microglobulin fibrils and significantly higher than the wild-type homogeneous fibrils prepared at neutral pH in the presence of 20% trifluoroethanol. These results suggest that the surface of D76N β 2-microglobulin fibrils can favor the transition of the wild-type protein into an amyloid conformation leading to a rapid integration into fibrils. The chaperone crystallin, which is a mild modulator of the lag phase of the variant fibrillogenesis, potently inhibits fibril elongation of the wild-type even once it is absorbed on D76N β 2-microglobulin fibrils.

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          Most cited references33

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          Instability, unfolding and aggregation of human lysozyme variants underlying amyloid fibrillogenesis.

          Tissue deposition of soluble proteins as amyloid fibrils underlies a range of fatal diseases. The two naturally occurring human lysozyme variants are both amyloidogenic, and are shown here to be unstable. They aggregate to form amyloid fibrils with transformation of the mainly helical native fold, observed in crystal structures, to the amyloid fibril cross-beta fold. Biophysical studies suggest that partly folded intermediates are involved in fibrillogenesis, and this may be relevant to amyloidosis generally.
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            Unfolding free energy changes determined by the linear extrapolation method. 1. Unfolding of phenylmethanesulfonyl alpha-chymotrypsin using different denaturants.

            Characteristics and properties of the unfolding free energy change, delta G degrees N-U, as determined by the linear extrapolation method are assessed for the unfolding of phenylmethanesulfonyl chymotrypsin (PMS-Ct). Difference spectral measurements at 293 nm were used to define PMS-Ct unfolding brought about with guanidinium chloride, urea, and 1,3-dimethylurea. All three denaturants were shown to give identical extinction coefficient differences (delta epsilon N-U) between native and unfolded forms of the protein in the limit of zero concentration of denaturant. The independence of delta epsilon N-U on denaturant supports the linear extension of pre- and postdenaturational base lines into the transition zone, allowing evaluation of unfolding equilibrium constants based on the two-state assumption. An expression, based on the linear extrapolation method, was used to provide estimates of delta G degrees N-U for the three denaturants using nonlinear least-squares fitting of the primary data, delta epsilon versus [denaturant]. The three delta G degrees N-U values were identical, within error, suggesting that the free energy change is a property of the protein system and independent of denaturant. It is suggested that the error in delta G degrees N-U determined from use of the linear extrapolation method is significantly larger than commonly reported in the literature.
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              ATR-FTIR: a "rejuvenated" tool to investigate amyloid proteins.

              Amyloid refers to insoluble protein aggregates that are responsible for amyloid diseases but are also implicated in important physiological functions (functional amyloids). The widespread presence of protein aggregates but also, in most of the cases, their deleterious effects explain worldwide efforts made to understand their formation, structure and biological functions. We emphasized the role of FTIR and especially ATR-FTIR techniques in amyloid protein and/or peptide studies. The multiple advantages provided by ATR-FTIR allow an almost continuous structural view of protein/peptide conversion during the aggregation process. Moreover, it is now well-established that infrared can differentiate oligomers from fibrils simply on their spectral features. ATR-FTIR is certainly the fastest and easiest method to obtain this information. ATR-FTIR occupies a key position in the analysis and comprehension of the complex aggregation mechanism(s) at the oligomer and/or fibril level. These mechanism(s) seem to present strong similarities between different amyloid proteins and might therefore be extremely important to understand for both disease-associated and functional amyloid proteins. This article is part of a Special Issue entitled: FTIR in membrane proteins and peptide studies.
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                Author and article information

                Journal
                J Biol Chem
                J. Biol. Chem
                jbc
                jbc
                JBC
                The Journal of Biological Chemistry
                American Society for Biochemistry and Molecular Biology (11200 Rockville Pike, Suite 302, Rockville, MD 20852-3110, U.S.A. )
                0021-9258
                1083-351X
                29 April 2016
                26 February 2016
                26 February 2016
                : 291
                : 18
                : 9678-9689
                Affiliations
                From the []Department of Biotechnology and Biosciences, University of Milano-Bicocca, 20126 Milan, Italy,
                the [§ ]Consorzio Nazionale Interuniversitario per le Scienze Fisiche della Materia (CNISM), UdR Milano-Bicocca, 20126 Milan, Italy,
                the []Wolfson Drug Discovery Unit, Centre for Amyloidosis and Acute Phase Proteins, Division of Medicine, University College London, London NW3 2PF, United Kingdom,
                the Departments of []Molecular Medicine, Institute of Biochemistry, and
                the [** ]Internal Medicine and Therapeutics, University of Pavia, 27100 Pavia, Italy, and
                the [‡‡ ]Department of Physics, University of Genoa, 16146 Genoa, Italy
                Author notes
                [1 ] To whom correspondence should be addressed. Tel.: 39-0382-987883; E-mail: sara.raimondi@ 123456unipv.it .
                Article
                M116.720573
                10.1074/jbc.M116.720573
                4850305
                26921323
                39f888a5-6031-45eb-a438-f77b378d0c50
                © 2016 by The American Society for Biochemistry and Molecular Biology, Inc.

                Author's Choice—Final version free via Creative Commons CC-BY license.

                History
                : 10 February 2016
                Funding
                Funded by: Medical Research Council http://dx.doi.org/10.13039/501100000265
                Award ID: MR/K000187/1
                Funded by: Ministero dell'Istruzione, dell'Università e della Ricerca http://dx.doi.org/10.13039/501100003407
                Award ID: FIRB RBFR109EOS
                Funded by: Fondazione Cariplo http://dx.doi.org/10.13039/501100002803
                Award ID: 2013–0964
                Award ID: 2014–0700
                Funded by: Fondazione Telethon http://dx.doi.org/10.13039/501100002426
                Award ID: GG14127
                Categories
                Molecular Bases of Disease

                Biochemistry
                amyloid,fibril,fourier transform ir (ftir),protein aggregation,protein misfolding,β2-microglobulin

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