17
views
0
recommends
+1 Recommend
0 collections
    0
    shares
      • Record: found
      • Abstract: found
      • Article: found
      Is Open Access

      Modeling somatic computation with non-neural bioelectric networks

      research-article
      ,
      Scientific Reports
      Nature Publishing Group UK
      Cognitive neuroscience, Computational science

      Read this article at

      Bookmark
          There is no author summary for this article yet. Authors can add summaries to their articles on ScienceOpen to make them more accessible to a non-specialist audience.

          Abstract

          The field of basal cognition seeks to understand how adaptive, context-specific behavior occurs in non-neural biological systems. Embryogenesis and regeneration require plasticity in many tissue types to achieve structural and functional goals in diverse circumstances. Thus, advances in both evolutionary cell biology and regenerative medicine require an understanding of how non-neural tissues could process information. Neurons evolved from ancient cell types that used bioelectric signaling to perform computation. However, it has not been shown whether or how non-neural bioelectric cell networks can support computation. We generalize connectionist methods to non-neural tissue architectures, showing that a minimal non-neural Bio-Electric Network (BEN) model that utilizes the general principles of bioelectricity (electrodiffusion and gating) can compute. We characterize BEN behaviors ranging from elementary logic gates to pattern detectors, using both fixed and transient inputs to recapitulate various biological scenarios. We characterize the mechanisms of such networks using dynamical-systems and information-theory tools, demonstrating that logic can manifest in bidirectional, continuous, and relatively slow bioelectrical systems, complementing conventional neural-centric architectures. Our results reveal a variety of non-neural decision-making processes as manifestations of general cellular biophysical mechanisms and suggest novel bioengineering approaches to construct functional tissues for regenerative medicine and synthetic biology as well as new machine learning architectures.

          Related collections

          Most cited references92

          • Record: found
          • Abstract: found
          • Article: not found

          Regulation of pattern recognition receptor signalling in plants.

          Recognition of pathogen-derived molecules by pattern recognition receptors (PRRs) is a common feature of both animal and plant innate immune systems. In plants, PRR signalling is initiated at the cell surface by kinase complexes, resulting in the activation of immune responses that ward off microorganisms. However, the activation and amplitude of innate immune responses must be tightly controlled. In this Review, we summarize our knowledge of the early signalling events that follow PRR activation and describe the mechanisms that fine-tune immune signalling to maintain immune homeostasis. We also illustrate the mechanisms used by pathogens to inhibit innate immune signalling and discuss how the innate ability of plant cells to monitor the integrity of key immune components can lead to autoimmune phenotypes following genetic or pathogen-induced perturbations of these components.
            Bookmark
            • Record: found
            • Abstract: found
            • Article: not found

            Pyramidal neuron as two-layer neural network.

            The pyramidal neuron is the principal cell type in the mammalian forebrain, but its function remains poorly understood. Using a detailed compartmental model of a hippocampal CA1 pyramidal cell, we recorded responses to complex stimuli consisting of dozens of high-frequency activated synapses distributed throughout the apical dendrites. We found the cell's firing rate could be predicted by a simple formula that maps the physical components of the cell onto those of an abstract two-layer "neural network." In the first layer, synaptic inputs drive independent sigmoidal subunits corresponding to the cell's several dozen long, thin terminal dendrites. The subunit outputs are then summed within the main trunk and cell body prior to final thresholding. We conclude that insofar as the neural code is mediated by average firing rate, a two-layer neural network may provide a useful abstraction for the computing function of the individual pyramidal neuron.
              Bookmark
              • Record: found
              • Abstract: found
              • Article: not found

              Computational subunits in thin dendrites of pyramidal cells.

              The thin basal and oblique dendrites of cortical pyramidal neurons receive most of the synaptic inputs from other cells, but their integrative properties remain uncertain. Previous studies have most often reported global linear or sublinear summation. An alternative view, supported by biophysical modeling studies, holds that thin dendrites provide a layer of independent computational 'subunits' that sigmoidally modulate their inputs prior to global summation. To distinguish these possibilities, we combined confocal imaging and dual-site focal synaptic stimulation of identified thin dendrites in rat neocortical pyramidal neurons. We found that nearby inputs on the same branch summed sigmoidally, whereas widely separated inputs or inputs to different branches summed linearly. This strong spatial compartmentalization effect is incompatible with a global summation rule and provides the first experimental support for a two-layer 'neural network' model of pyramidal neuron thin-branch integration. Our findings could have important implications for the computing and memory-related functions of cortical tissue.
                Bookmark

                Author and article information

                Contributors
                michael.levin@tufts.edu
                Journal
                Sci Rep
                Sci Rep
                Scientific Reports
                Nature Publishing Group UK (London )
                2045-2322
                9 December 2019
                9 December 2019
                2019
                : 9
                : 18612
                Affiliations
                ISNI 0000 0004 1936 7531, GRID grid.429997.8, Allen Discovery Center, 200 College Ave., , Tufts University, ; Medford, MA 02155 USA
                Author information
                http://orcid.org/0000-0001-7292-8084
                Article
                54859
                10.1038/s41598-019-54859-8
                6901451
                31819119
                3d164cb6-4e13-4b62-bf55-08e9886aba2e
                © The Author(s) 2019

                Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

                History
                : 21 June 2019
                : 13 November 2019
                Funding
                Funded by: FundRef https://doi.org/10.13039/100000952, Paul G. Allen Family Foundation;
                Award ID: 12171
                Award Recipient :
                Funded by: FundRef https://doi.org/10.13039/501100011730, Templeton World Charity Foundation (Templeton World Charity Foundation, Inc.);
                Award ID: TWCF0089/AB55
                Award Recipient :
                Funded by: FundRef https://doi.org/10.13039/100000001, National Science Foundation (NSF);
                Award ID: CBET-0939511
                Award Recipient :
                Categories
                Article
                Custom metadata
                © The Author(s) 2019

                Uncategorized
                cognitive neuroscience,computational science
                Uncategorized
                cognitive neuroscience, computational science

                Comments

                Comment on this article