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      Cassava Breeding II: Phenotypic Correlations through the Different Stages of Selection

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          Abstract

          Breeding cassava relies on a phenotypic recurrent selection that takes advantage of the vegetative propagation of this crop. Successive stages of selection (single row trial–SRT; preliminary yield trial–PYT; advanced yield trial–AYT; and uniform yield trials UYT), gradually reduce the number of genotypes as the plot size, number of replications and locations increase. An important feature of this scheme is that, because of the clonal, reproduction of cassava, the same identical genotypes are evaluated throughout these four successive stages of selection. For this study data, from 14 years (more than 30,000 data points) of evaluation in a sub-humid tropical environment was consolidated for a meta-analysis. Correlation coefficients for fresh root yield (FRY), dry matter content (DMC), harvest index (HIN), and plant type score (PTS) along the different stages of selection were estimated. DMC and PTS measured in different trials showed the highest correlation coefficients, indicating a relatively good repeatability. HIN had an intermediate repeatability, whereas FRY had the lowest value. The association between HIN and FRY was lower than expected, suggesting that HIN in early stages was not reliable as indirect selection for FRY in later stages. There was a consistent decrease in the average performance of clones grown in PYTs compared with the earlier evaluation of the same genotypes at SRTs. A feasible explanation for this trend is the impact of the environment on the physiological and nutritional status of the planting material and/or epigenetic effects. The usefulness of HIN is questioned. Measuring this variable takes considerable efforts at harvest time. DMC and FRY showed a weak positive association in SRT ( r = 0.21) but a clearly negative one at UYT ( r = −0.42). The change in the relationship between these variables is the result of selection. In later stages of selection, the plant is forced to maximize productivity on a dry weight basis either by maximizing FRY or DMC, but not both. Alternatively, the plant may achieve high dry root yield by simultaneously attaining “acceptable” (but not maximum) levels of FRY and DMC.

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          Most cited references18

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          Epigenetic regulation of adaptive responses of forest tree species to the environment

          Epigenetic variation is likely to contribute to the phenotypic plasticity and adaptative capacity of plant species, and may be especially important for long-lived organisms with complex life cycles, including forest trees. Diverse environmental stresses and hybridization/polyploidization events can create reversible heritable epigenetic marks that can be transmitted to subsequent generations as a form of molecular “memory”. Epigenetic changes might also contribute to the ability of plants to colonize or persist in variable environments. In this review, we provide an overview of recent data on epigenetic mechanisms involved in developmental processes and responses to environmental cues in plant, with a focus on forest tree species. We consider the possible role of forest tree epigenetics as a new source of adaptive traits in plant breeding, biotechnology, and ecosystem conservation under rapid climate change.
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            Cassava breeding: opportunities and challenges.

            Although cassava is a major food crop, its scientific breeding began only recently compared with other crops. Significant progress has been achieved, particularly in Asia where cassava is used mainly for industrial processes and no major biotic constraints affect its productivity. Cassava breeding faces several limitations that need to be addressed. The heterozygous nature of the crop and parental lines used to generate new segregating progenies makes it difficult to identify parents with good breeding values. Breeding so far has been mainly based on a mass phenotypic recurrent selection. There is very little knowledge on the inheritance of traits of agronomic relevance. Several approaches have been taken to overcome the constraints in the current methodologies for the genetic improvement of cassava. Evaluations at early stages of selection allow for estimates of general combining ability effect or breeding values of parental lines. Inbreeding by sequential self-pollination facilitates the identification of useful recessive traits, either already present in the Manihot gene pool or induced by mutagenesis.
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              Genetic and Environmental Effects on Dry Matter Content of Cassava Root1

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                Author and article information

                Contributors
                Journal
                Front Plant Sci
                Front Plant Sci
                Front. Plant Sci.
                Frontiers in Plant Science
                Frontiers Media S.A.
                1664-462X
                15 December 2016
                2016
                : 7
                : 1649
                Affiliations
                [1] 1International Center for Tropical Agriculture, Apartado Aéreo 6713 Cali, Colombia
                [2] 2Corporación Colombiana de Investigación Agropecuaria Santa Marta, Colombia
                Author notes

                Edited by: Donal Martin O'Sullivan, University of Reading, UK

                Reviewed by: Bao-Lam Huynh, University of California, Riverside, USA; Edwin Nuijten, Louis Bolk Instituut, Netherlands

                *Correspondence: Hernán Ceballos h.ceballos@ 123456cgiar.org

                This article was submitted to Crop Science and Horticulture, a section of the journal Frontiers in Plant Science

                Article
                10.3389/fpls.2016.01649
                5156711
                28018365
                3eb9f678-01af-4a92-ba73-c1fa6a1baf74
                Copyright © 2016 Joaqui Barandica, Pérez, Lenis, Calle, Morante, Pino, Hershey and Ceballos.

                This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

                History
                : 08 February 2016
                : 20 October 2016
                Page count
                Figures: 1, Tables: 4, Equations: 2, References: 36, Pages: 11, Words: 9204
                Categories
                Plant Science
                Original Research

                Plant science & Botany
                early selection,epigenetic effects,experimental error,quality of planting material,repeatability

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