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      Shaping Neuronal Network Activity by Presynaptic Mechanisms

      research-article
      1 , 2 , 2 , 3 , 1 , 2 , *
      PLoS Computational Biology
      Public Library of Science

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          Abstract

          Neuronal microcircuits generate oscillatory activity, which has been linked to basic functions such as sleep, learning and sensorimotor gating. Although synaptic release processes are well known for their ability to shape the interaction between neurons in microcircuits, most computational models do not simulate the synaptic transmission process directly and hence cannot explain how changes in synaptic parameters alter neuronal network activity. In this paper, we present a novel neuronal network model that incorporates presynaptic release mechanisms, such as vesicle pool dynamics and calcium-dependent release probability, to model the spontaneous activity of neuronal networks. The model, which is based on modified leaky integrate-and-fire neurons, generates spontaneous network activity patterns, which are similar to experimental data and robust under changes in the model's primary gain parameters such as excitatory postsynaptic potential and connectivity ratio. Furthermore, it reliably recreates experimental findings and provides mechanistic explanations for data obtained from microelectrode array recordings, such as network burst termination and the effects of pharmacological and genetic manipulations. The model demonstrates how elevated asynchronous release, but not spontaneous release, synchronizes neuronal network activity and reveals that asynchronous release enhances utilization of the recycling vesicle pool to induce the network effect. The model further predicts a positive correlation between vesicle priming at the single-neuron level and burst frequency at the network level; this prediction is supported by experimental findings. Thus, the model is utilized to reveal how synaptic release processes at the neuronal level govern activity patterns and synchronization at the network level.

          Author Summary

          The activity of neuronal networks underlies basic neural functions such as sleep, learning and sensorimotor gating. Computational models of neuronal networks have been developed to capture the complexity of the network activity and predict how neuronal networks generate spontaneous activity. However, most computational models do not simulate the intricate synaptic release process that governs the interaction between neurons and has been shown to significantly impact neuronal network activity and animal behavior, learning and memory. Our paper demonstrates the importance of simulating the elaborate synaptic release process to understand how neuronal networks generate spontaneous activity and respond to manipulations of the release process. The model provides mechanistic explanations and predictions for experimental pharmacological and genetic manipulations. Thus, the model presents a novel computational platform to understand how mechanistic changes in the synaptic release process modulate network oscillatory activity that might impact basic neural functions.

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          Simple model of spiking neurons.

          A model is presented that reproduces spiking and bursting behavior of known types of cortical neurons. The model combines the biologically plausibility of Hodgkin-Huxley-type dynamics and the computational efficiency of integrate-and-fire neurons. Using this model, one can simulate tens of thousands of spiking cortical neurons in real time (1 ms resolution) using a desktop PC.
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              The small world of the cerebral cortex.

              While much information is available on the structural connectivity of the cerebral cortex, especially in the primate, the main organizational principles of the connection patterns linking brain areas, columns and individual cells have remained elusive. We attempt to characterize a wide variety of cortical connectivity data sets using a specific set of graph theory methods. We measure global aspects of cortical graphs including the abundance of small structural motifs such as cycles, the degree of local clustering of connections and the average path length. We examine large-scale cortical connection matrices obtained from neuroanatomical data bases, as well as probabilistic connection matrices at the level of small cortical neuronal populations linked by intra-areal and inter-areal connections. All cortical connection matrices examined in this study exhibit "small-world" attributes, characterized by the presence of abundant clustering of connections combined with short average distances between neuronal elements. We discuss the significance of these universal organizational features of cortex in light of functional brain anatomy. Supplementary materials are at www.indiana.edu/~cortex/lab.htm.
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                Author and article information

                Contributors
                Role: Editor
                Journal
                PLoS Comput Biol
                PLoS Comput. Biol
                plos
                ploscomp
                PLoS Computational Biology
                Public Library of Science (San Francisco, CA USA )
                1553-734X
                1553-7358
                15 September 2015
                September 2015
                : 11
                : 9
                : e1004438
                Affiliations
                [1 ]Department of Neurobiology, Life Sciences Institute, Tel Aviv University, Tel Aviv, Israel
                [2 ]Sagol School of Neuroscience, Tel Aviv University, Tel Aviv, Israel
                [3 ]Sackler School of Medicine, Tel Aviv University, Tel Aviv, Israel
                École Normale Supérieure, College de France, CNRS, FRANCE
                Author notes

                The authors have declared that no competing interests exist.

                Conceived and designed the experiments: AL OP UA. Performed the experiments: AL OP UA. Analyzed the data: AL OP UA. Contributed reagents/materials/analysis tools: AL OP UA. Wrote the paper: AL OP UA.

                Article
                PCOMPBIOL-D-15-00041
                10.1371/journal.pcbi.1004438
                4570815
                26372048
                3ed7c9bf-65f1-40f7-871b-5d677b738cd1
                Copyright @ 2015

                This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited

                History
                : 13 January 2015
                : 23 June 2015
                Page count
                Figures: 4, Tables: 1, Pages: 27
                Funding
                This work was supported, in part, by Israel Science Foundation Grants 1211/07 and 730/11 ( http://www.isf.org.il/english/) and the German–Israeli Foundation Grant 1125- 145.1/2010 ( http://www.gif.org.il/Pages/default.aspx) to UA. AL received a Teva Pharmaceutical Industries Ltd. fellowship under the Israeli National Network of Excellence in Neuroscience (NNE) established by Teva. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
                Categories
                Research Article
                Custom metadata
                All relevant data are within the paper and its Supporting Information files.

                Quantitative & Systems biology
                Quantitative & Systems biology

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