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      Common functional localizers to enhance NHP & cross-species neuroscience imaging research

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          Abstract

          Functional localizers are invaluable as they can help define regions of interest, provide cross-study comparisons, and most importantly, allow for the aggregation and meta-analyses of data across studies and laboratories. To achieve these goals within the non-human primate (NHP) imaging community, there is a pressing need for the use of standardized and validated localizers that can be readily implemented across different groups. The goal of this paper is to provide an overview of the value of localizer protocols to imaging research and we describe a number of commonly used or novel localizers within NHPs, and keys to implement them across studies. As has been shown with the aggregation of resting-state imaging data in the original PRIME-DE submissions, we believe that the field is ready to apply the same initiative for task-based functional localizers in NHP imaging. By coming together to collect large datasets across research group, implementing the same functional localizers, and sharing the localizers and data via PRIME-DE, it is now possible to fully test their robustness, selectivity and specificity. To do this, we reviewed a number of common localizers and we created a repository of well-established localizer that are easily accessible and implemented through the PRIME-RE platform.

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          Most cited references207

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          Functional connectivity in the motor cortex of resting human brain using echo-planar MRI.

          An MRI time course of 512 echo-planar images (EPI) in resting human brain obtained every 250 ms reveals fluctuations in signal intensity in each pixel that have a physiologic origin. Regions of the sensorimotor cortex that were activated secondary to hand movement were identified using functional MRI methodology (FMRI). Time courses of low frequency (< 0.1 Hz) fluctuations in resting brain were observed to have a high degree of temporal correlation (P < 10(-3)) within these regions and also with time courses in several other regions that can be associated with motor function. It is concluded that correlation of low frequency fluctuations, which may arise from fluctuations in blood oxygenation or flow, is a manifestation of functional connectivity of the brain.
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            Distributed and overlapping representations of faces and objects in ventral temporal cortex.

            The functional architecture of the object vision pathway in the human brain was investigated using functional magnetic resonance imaging to measure patterns of response in ventral temporal cortex while subjects viewed faces, cats, five categories of man-made objects, and nonsense pictures. A distinct pattern of response was found for each stimulus category. The distinctiveness of the response to a given category was not due simply to the regions that responded maximally to that category, because the category being viewed also could be identified on the basis of the pattern of response when those regions were excluded from the analysis. Patterns of response that discriminated among all categories were found even within cortical regions that responded maximally to only one category. These results indicate that the representations of faces and objects in ventral temporal cortex are widely distributed and overlapping.
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              The Fusiform Face Area: A Module in Human Extrastriate Cortex Specialized for Face Perception

              Using functional magnetic resonance imaging (fMRI), we found an area in the fusiform gyrus in 12 of the 15 subjects tested that was significantly more active when the subjects viewed faces than when they viewed assorted common objects. This face activation was used to define a specific region of interest individually for each subject, within which several new tests of face specificity were run. In each of five subjects tested, the predefined candidate “face area” also responded significantly more strongly to passive viewing of (1) intact than scrambled two-tone faces, (2) full front-view face photos than front-view photos of houses, and (in a different set of five subjects) (3) three-quarter-view face photos (with hair concealed) than photos of human hands; it also responded more strongly during (4) a consecutive matching task performed on three-quarter-view faces versus hands. Our technique of running multiple tests applied to the same region defined functionally within individual subjects provides a solution to two common problems in functional imaging: (1) the requirement to correct for multiple statistical comparisons and (2) the inevitable ambiguity in the interpretation of any study in which only two or three conditions are compared. Our data allow us to reject alternative accounts of the function of the fusiform face area (area “FF”) that appeal to visual attention, subordinate-level classification, or general processing of any animate or human forms, demonstrating that this region is selectively involved in the perception of faces.
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                Author and article information

                Journal
                9215515
                20498
                Neuroimage
                Neuroimage
                NeuroImage
                1053-8119
                1095-9572
                8 October 2021
                25 May 2021
                15 August 2021
                21 October 2021
                : 237
                : 118203
                Affiliations
                [a ]Center for Biomedical Imaging and Neuromodulation, Nathan Kline Institute, Orangeburg, NY, United States
                [b ]Department of Neuroscience, Icahn School of Medicine at Mount Sinai, New York City, NY, United States
                [c ]Department of Psychiatry, New York University at Langone, New York City, NY, United States
                [d ]Biosciences Institute, Newcastle University Medical School, Newcastle upon Tyne, United Kingdom
                [e ]Shanghai Key Laboratory of Brain Functional Genomics, Key Laboratory of Brain Functional Genomics Ministry of Education, Shanghai Key Laboratory of Magnetic Resonance, Affiliated Mental Health Center (ECNU), School of Psychology and Cognitive Science, East China Normal University, Shanghai, China
                [f ]Division of Natural and Applied Sciences, Duke Kunshan University, Kunshan, Jiangsu, China
                [g ]NYU-ECNU Institute of Brain and Cognitive Science at NYU Shanghai, Shanghai, China
                [h ]Cognitive Neuroimaging Unit, INSERM, CEA, Université Paris-Saclay, NeuroSpin Center, 91191 Gif/Yvette, France
                [i ]Laboratory for Neuro-and Psychophysiology, Department of Neurosciences, KU Leuven Medical School, Leuven, 3000, Belgium
                [j ]Institut de Neurosciences de La Timone, Aix-Marseille Université et CNRS, Marseille, 13005, France
                [k ]Leuven Brain Institute, KU Leuven, Leuven, 3000, Belgium
                [l ]Athinoula A. Martinos Center for Biomedical Imaging, Massachusetts General Hospital, Charlestown, MA 02129, United States
                [m ]Department of Radiology, Harvard Medical School, Boston, MA 02144, United States
                [n ]Institut des Sciences Cognitives Marc Jeannerod, UMR 5229, Université de Lyon – CNRS, France
                Author notes
                [* ]Corresponding authors. Brian.Russ@ 123456nki.rfmh.org (B.E. Russ), wim.vanduffel@ 123456kuleuven.be (W. Vanduffel), benhamed@ 123456isc.cnrs.fr (S.B. Hamed).
                Article
                NIHMS1745739
                10.1016/j.neuroimage.2021.118203
                8529529
                34048898
                3f83ef65-61b4-4163-8185-68cf1d3d86e6

                This is an open access article under the CC BY-NC-ND license ( http://creativecommons.org/licenses/by-nc-nd/4.0/)

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                Article

                Neurosciences
                fmri,non-human primate,brain,localizers,retinotopy,face,metadata
                Neurosciences
                fmri, non-human primate, brain, localizers, retinotopy, face, metadata

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