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      Enhanced Performance of Brain Tumor Classification via Tumor Region Augmentation and Partition

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          Abstract

          Automatic classification of tissue types of region of interest (ROI) plays an important role in computer-aided diagnosis. In the current study, we focus on the classification of three types of brain tumors (i.e., meningioma, glioma, and pituitary tumor) in T1-weighted contrast-enhanced MRI (CE-MRI) images. Spatial pyramid matching (SPM), which splits the image into increasingly fine rectangular subregions and computes histograms of local features from each subregion, exhibits excellent results for natural scene classification. However, this approach is not applicable for brain tumors, because of the great variations in tumor shape and size. In this paper, we propose a method to enhance the classification performance. First, the augmented tumor region via image dilation is used as the ROI instead of the original tumor region because tumor surrounding tissues can also offer important clues for tumor types. Second, the augmented tumor region is split into increasingly fine ring-form subregions. We evaluate the efficacy of the proposed method on a large dataset with three feature extraction methods, namely, intensity histogram, gray level co-occurrence matrix (GLCM), and bag-of-words (BoW) model. Compared with using tumor region as ROI, using augmented tumor region as ROI improves the accuracies to 82.31% from 71.39%, 84.75% from 78.18%, and 88.19% from 83.54% for intensity histogram, GLCM, and BoW model, respectively. In addition to region augmentation, ring-form partition can further improve the accuracies up to 87.54%, 89.72%, and 91.28%. These experimental results demonstrate that the proposed method is feasible and effective for the classification of brain tumors in T1-weighted CE-MRI.

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          Most cited references7

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          Visual word ambiguity.

          This paper studies automatic image classification by modeling soft assignment in the popular codebook model. The codebook model describes an image as a bag of discrete visual words selected from a vocabulary, where the frequency distributions of visual words in an image allow classification. One inherent component of the codebook model is the assignment of discrete visual words to continuous image features. Despite the clear mismatch of this hard assignment with the nature of continuous features, the approach has been successfully applied for some years. In this paper, we investigate four types of soft assignment of visual words to image features. We demonstrate that explicitly modeling visual word assignment ambiguity improves classification performance compared to the hard assignment of the traditional codebook model. The traditional codebook model is compared against our method for five well-known data sets: 15 natural scenes, Caltech-101, Caltech-256, and Pascal VOC 2007/2008. We demonstrate that large codebook vocabulary sizes completely deteriorate the performance of the traditional model, whereas the proposed model performs consistently. Moreover, we show that our method profits in high-dimensional feature spaces and reaps higher benefits when increasing the number of image categories.
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            On standardizing the MR image intensity scale.

            The lack of a standard image intensity scale in MRI causes many difficulties in image display and analysis. A two-step postprocessing method is proposed for standardizing the intensity scale in such a way that for the same MR protocol and body region, similar intensities will have similar tissue meaning. In the first step, the parameters of the standardizing transformation are "learned" from a set of images. In the second step, for each MR study these parameters are used to map their histogram into the standardized histogram. The method was tested quantitatively on 90 whole-brain studies of multiple sclerosis patients for several protocols and qualitatively for several other protocols and body regions. Measurements using mean squared difference showed that the standardized image intensities have statistically significantly (P < 0.01) more consistent range and meaning than the originals. Fixed gray level windows can be established for the standardized images and used for display without the need of per case adjustment. Preliminary results also indicate that the method facilitates improving the degree of automation of image segmentation. Magn Reson Med 42:1072-1081, 1999. Copyright 1999 Wiley-Liss, Inc.
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              Supervised Learning of Quantizer Codebooks by Information Loss Minimization

              This paper proposes a technique for jointly quantizing continuous features and the posterior distributions of their class labels based on minimizing empirical information loss such that the quantizer index of a given feature vector approximates a sufficient statistic for its class label. Informally, the quantized representation retains as much information as possible for classifying the feature vector correctly. We derive an alternating minimization procedure for simultaneously learning codebooks in the euclidean feature space and in the simplex of posterior class distributions. The resulting quantizer can be used to encode unlabeled points outside the training set and to predict their posterior class distributions, and has an elegant interpretation in terms of lossless source coding. The proposed method is validated on synthetic and real data sets and is applied to two diverse problems: learning discriminative visual vocabularies for bag-of-features image classification and image segmentation.
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                Author and article information

                Contributors
                Role: Editor
                Journal
                PLoS One
                PLoS ONE
                plos
                plosone
                PLoS ONE
                Public Library of Science (San Francisco, CA USA )
                1932-6203
                8 October 2015
                2015
                : 10
                : 10
                : e0140381
                Affiliations
                [1 ]School of Biomedical Engineering, Southern Medical University, Guangzhou, China
                [2 ]Department of Obstetrics and Gynecology, Nanfang Hospital of Southern Medical University, Guangzhou, China
                Nanjing University of Aeronautic and Astronautics, CHINA
                Author notes

                Competing Interests: The authors have declared that no competing interests exist.

                Conceived and designed the experiments: JC QF. Performed the experiments: JC WH. Analyzed the data: JC WH SC RY. Contributed reagents/materials/analysis tools: WY ZY. Wrote the paper: JC ZW QF.

                Article
                PONE-D-15-21251
                10.1371/journal.pone.0140381
                4598126
                26447861
                43ec41a7-2a6b-4a5c-9425-bdf0f29e0c08
                Copyright @ 2015

                This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited

                History
                : 15 May 2015
                : 24 September 2015
                Page count
                Figures: 5, Tables: 10, Pages: 13
                Funding
                This work was supported by the National Key Technology Research and Development Program of the Ministry of Science and Technology of China ( http://kjzc.jhgl.org/) under grant (No. 2012BAI14B02), the National Natural Science Foundation of China ( http://www.nsfc.gov.cn/) under grant (No. 81101109 and No. 31371009), the National High Technology Research and Development Program of China (863 Program) ( http://www.863.gov.cn/) under grant (No. 2012AA02A616), Program of Pearl River Young Talents of Science and Technology in Guangzhou ( http://www.gzsi.gov.cn/) under grant (No. 2013J2200065), and Program of Pearl River Young Talents of Science and Technology in Guangzhou ( http://www.gzsi.gov.cn/) under grant (No. 2012J2200041). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
                Categories
                Research Article
                Custom metadata
                The data are available from Figshare ( http://dx.doi.org/10.6084/m9.figshare.1512427).

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