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      Alterations in the Intestinal Morphology, Gut Microbiota, and Trace Mineral Status Following Intra-Amniotic Administration ( Gallus gallus) of Teff ( Eragrostis tef) Seed Extracts

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          Abstract

          The consumption of teff ( Eragrostis tef), a gluten-free cereal grain, has increased due to its dense nutrient composition including complex carbohydrates, unsaturated fatty acids, trace minerals (especially Fe), and phytochemicals. This study utilized the clinically-validated Gallus gallus intra amniotic feeding model to assess the effects of intra-amniotic administration of teff extracts versus controls using seven groups: (1) non-injected; (2) 18Ω H 2O injected; (3) 5% inulin; (4) teff extract 1%; (5) teff extract 2.5%; (6) teff extract 5%; and (7) teff extract 7.5%. The treatment groups were compared to each other and to controls. Our data demonstrated a significant improvement in hepatic iron (Fe) and zinc (Zn) concentration and LA:DGLA ratio without concomitant serum concentration changes, up-regulation of various Fe and Zn brush border membrane proteins, and beneficial morphological changes to duodenal villi and goblet cells. No significant taxonomic alterations were observed using 16S rRNA sequencing of the cecal microbiota. Several important bacterial metabolic pathways were differentially enriched in the teff group, likely due to teff’s high relative fiber concentration, demonstrating an important bacterial-host interaction that contributed to improvements in the physiological status of Fe and Zn. Therefore, teff appeared to represent a promising staple food crop and should be further evaluated.

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          Metagenomic biomarker discovery and explanation

          This study describes and validates a new method for metagenomic biomarker discovery by way of class comparison, tests of biological consistency and effect size estimation. This addresses the challenge of finding organisms, genes, or pathways that consistently explain the differences between two or more microbial communities, which is a central problem to the study of metagenomics. We extensively validate our method on several microbiomes and a convenient online interface for the method is provided at http://huttenhower.sph.harvard.edu/lefse/.
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            Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

            Profiling phylogenetic marker genes, such as the 16S rRNA gene, is a key tool for studies of microbial communities but does not provide direct evidence of a community’s functional capabilities. Here we describe PICRUSt (Phylogenetic Investigation of Communities by Reconstruction of Unobserved States), a computational approach to predict the functional composition of a metagenome using marker gene data and a database of reference genomes. PICRUSt uses an extended ancestral-state reconstruction algorithm to predict which gene families are present and then combines gene families to estimate the composite metagenome. Using 16S information, PICRUSt recaptures key findings from the Human Microbiome Project and accurately predicts the abundance of gene families in host-associated and environmental communities, with quantifiable uncertainty. Our results demonstrate that phylogeny and function are sufficiently linked that this ‘predictive metagenomic’ approach should provide useful insights into the thousands of uncultivated microbial communities for which only marker gene surveys are currently available.
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              Conservation evaluation and phylogenetic diversity

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                Author and article information

                Journal
                Nutrients
                Nutrients
                nutrients
                Nutrients
                MDPI
                2072-6643
                02 October 2020
                October 2020
                : 12
                : 10
                : 3020
                Affiliations
                [1 ]Department of Biological Sciences, Cornell University, Ithaca, NY 14853, USA; jrc438@ 123456cornell.edu
                [2 ]Department of Food Science, Cornell University, Stocking Hall, Ithaca, NY 14853-7201, USA; smr292@ 123456email.arizona.edu (S.R.); nk598@ 123456cornell.edu (N.K.)
                [3 ]Department of Family Medicine, Kaiser Permanente Fontana Medical Centers, Fontana, CA 92335, USA
                [4 ]Azrieli Faculty of Medicine, Bar-Ilan University, 1311502 Safed, Israel; adizimer@ 123456gmail.com (A.E.); omry.koren@ 123456biu.ac.il (O.K.)
                Author notes
                [* ]Correspondence: et79@ 123456cornell.edu ; Tel.: +1-607-255-0884
                Author information
                https://orcid.org/0000-0001-9193-317X
                https://orcid.org/0000-0002-7738-1337
                https://orcid.org/0000-0002-7856-5197
                Article
                nutrients-12-03020
                10.3390/nu12103020
                7601863
                33023112
                44c26438-7485-44a1-9f87-673e800c7683
                © 2020 by the authors.

                Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license ( http://creativecommons.org/licenses/by/4.0/).

                History
                : 20 August 2020
                : 30 September 2020
                Categories
                Article

                Nutrition & Dietetics
                teff,staple food crops,prebiotics,probiotics,iron deficiency,zinc deficiency,gut microbiota

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