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      Diagnosis and phylogenetic analysis of bovine leukemia virus in dairy cattle in northeastern Brazil

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          Abstract

          Enzootic bovine leukosis (EBL) is a chronic viral disease of wide distribution in cattle herds and may take several years for the first manifestation of clinical signs. Most animals do not present clinical signs. However, the economic losses are underestimated due to this disease. Thus, this work aimed to detect and characterize BLV in dairy cattle in the Maranhão state, northeastern Brazil. Blood samples were collected from 176 animals from 8 municipalities in the southeastern state of Maranhão. Bovine blood samples were subjected to DNA extraction and molecular diagnosis using nested PCR assays for BLV, targeting gp51 gene. Positive samples were then sequenced and then subjected to phylogenetic inferences. BLV DNA was detected in 16 cattle (16/176, 9.09%) in 4 municipalities. Phylogenetic analyzes showed that the sequence obtained clustered in a clade containing BLV sequences classified as genotype 6, with a high degree of support. Our data shows BLV occurrence in the Northeast of Brazil and the identification of genotype 6 in this region. These findings contribute to the molecular epidemiology of this agent in Brazil.

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          Most cited references47

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          MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms.

          The Molecular Evolutionary Genetics Analysis (Mega) software implements many analytical methods and tools for phylogenomics and phylomedicine. Here, we report a transformation of Mega to enable cross-platform use on Microsoft Windows and Linux operating systems. Mega X does not require virtualization or emulation software and provides a uniform user experience across platforms. Mega X has additionally been upgraded to use multiple computing cores for many molecular evolutionary analyses. Mega X is available in two interfaces (graphical and command line) and can be downloaded from www.megasoftware.net free of charge.
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            Basic local alignment search tool.

            A new approach to rapid sequence comparison, basic local alignment search tool (BLAST), directly approximates alignments that optimize a measure of local similarity, the maximal segment pair (MSP) score. Recent mathematical results on the stochastic properties of MSP scores allow an analysis of the performance of this method as well as the statistical significance of alignments it generates. The basic algorithm is simple and robust; it can be implemented in a number of ways and applied in a variety of contexts including straightforward DNA and protein sequence database searches, motif searches, gene identification searches, and in the analysis of multiple regions of similarity in long DNA sequences. In addition to its flexibility and tractability to mathematical analysis, BLAST is an order of magnitude faster than existing sequence comparison tools of comparable sensitivity.
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              DNA sequencing with chain-terminating inhibitors

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                Author and article information

                Contributors
                URI : http://loop.frontiersin.org/people/1967458/overview
                URI : http://loop.frontiersin.org/people/1890542/overview
                URI : http://loop.frontiersin.org/people/1012555/overview
                Journal
                Front Vet Sci
                Front Vet Sci
                Front. Vet. Sci.
                Frontiers in Veterinary Science
                Frontiers Media S.A.
                2297-1769
                13 January 2023
                2022
                : 9
                : 1080994
                Affiliations
                Department of Pathology, State University of Maranhão , São Luís, Brazil
                Author notes

                Edited by: Yi Yang, Yangzhou University, China

                Reviewed by: Dipak Deka, Assam Agricultural University, India; Tereza Cristina Cardoso, Universidade Estadual de São Paulo, Brazil

                *Correspondence: José Gomes Pereira ✉ josegomesneto@ 123456hotmail.com

                This article was submitted to Veterinary Experimental and Diagnostic Pathology, a section of the journal Frontiers in Veterinary Science

                Article
                10.3389/fvets.2022.1080994
                9880491
                36713884
                47859d8e-d7f9-4e63-9790-395bb88f6741
                Copyright © 2023 Pereira, Silva, Silva, Lima, do Rosário, Silva, Oliveira, Ribeiro, Santos, Abreu-Silva and Melo.

                This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

                History
                : 26 October 2022
                : 28 December 2022
                Page count
                Figures: 2, Tables: 1, Equations: 0, References: 51, Pages: 8, Words: 4804
                Funding
                This research was funded by FAPEMA—Fundação de Amparo à Pesquisa e ao Desenvolvimento Científico e Tecnológico do Maranhão FAPEMA; CAPES-Coordenação de Aperfeiçoamento de Pessoal de Nível Superior—Finance Code 001, and Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq) grant number 313348/2021-9.
                Categories
                Veterinary Science
                Original Research

                ebl,bovine,pcr,viral diseases,genetic characterization
                ebl, bovine, pcr, viral diseases, genetic characterization

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