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      Involvement of ceramide biosynthesis in increased extracellular vesicle release in Pkd1 knock out cells

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          Abstract

          Autosomal Dominant Polycystic Kidney Disease (ADPKD) is an inherited disorder characterized by the development of renal cysts, which frequently leads to renal failure. Hypertension and other cardiovascular symptoms contribute to the high morbidity and mortality of the disease. ADPKD is caused by mutations in the PKD1 gene or, less frequently, in the PKD2 gene. The disease onset and progression are highly variable between patients, whereby the underlying mechanisms are not fully elucidated. Recently, a role of extracellular vesicles (EVs) in the progression of ADPKD has been postulated. However, the mechanisms stimulating EV release in ADPKD have not been addressed and the participation of the distal nephron segments is still uninvestigated. Here, we studied the effect of Pkd1 deficiency on EV release in wild type and Pkd1 -/- mDCT15 and mIMCD3 cells as models of the distal convoluted tubule (DCT) and inner medullary collecting duct (IMCD), respectively. By using nanoparticle tracking analysis, we observed a significant increase in EV release in Pkd1 -/- mDCT15 and mIMCD3 cells, with respect to the wild type cells. The molecular mechanisms leading to the changes in EV release were further investigated in mDCT15 cells through RNA sequencing and qPCR studies. Specifically, we assessed the relevance of purinergic signaling and ceramide biosynthesis enzymes. Pkd1 -/- mDCT15 cells showed a clear upregulation of P2rx7 expression compared to wild type cells. Depletion of extracellular ATP by apyrase (ecto-nucleotidase) inhibited EV release only in wild type cells, suggesting an exacerbated signaling of the extracellular ATP/P2X7 pathway in Pkd1 -/- cells. In addition, we identified a significant up-regulation of the ceramide biosynthesis enzymes CerS6 and Smpd3 in Pkd1 -/- cells. Altogether, our findings suggest the involvement of the DCT in the EV-mediated ADPKD progression and points to the induction of ceramide biosynthesis as an underlying molecular mechanism. Further studies should be performed to investigate whether CerS6 and Smpd3 can be used as biomarkers of ADPKD onset, progression or severity.

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          Most cited references39

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          Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method.

          The two most commonly used methods to analyze data from real-time, quantitative PCR experiments are absolute quantification and relative quantification. Absolute quantification determines the input copy number, usually by relating the PCR signal to a standard curve. Relative quantification relates the PCR signal of the target transcript in a treatment group to that of another sample such as an untreated control. The 2(-Delta Delta C(T)) method is a convenient way to analyze the relative changes in gene expression from real-time quantitative PCR experiments. The purpose of this report is to present the derivation, assumptions, and applications of the 2(-Delta Delta C(T)) method. In addition, we present the derivation and applications of two variations of the 2(-Delta Delta C(T)) method that may be useful in the analysis of real-time, quantitative PCR data. Copyright 2001 Elsevier Science (USA).
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            Shedding light on the cell biology of extracellular vesicles

            Extracellular vesicles are a heterogeneous group of cell-derived membranous structures comprising exosomes and microvesicles, which originate from the endosomal system or which are shed from the plasma membrane, respectively. They are present in biological fluids and are involved in multiple physiological and pathological processes. Extracellular vesicles are now considered as an additional mechanism for intercellular communication, allowing cells to exchange proteins, lipids and genetic material. Knowledge of the cellular processes that govern extracellular vesicle biology is essential to shed light on the physiological and pathological functions of these vesicles as well as on clinical applications involving their use and/or analysis. However, in this expanding field, much remains unknown regarding the origin, biogenesis, secretion, targeting and fate of these vesicles.
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              Isolation and characterization of exosomes from cell culture supernatants and biological fluids.

              Exosomes are small membrane vesicles found in cell culture supernatants and in different biological fluids. Exosomes form in a particular population of endosomes, called multivesicular bodies (MVBs), by inward budding into the lumen of the compartment. Upon fusion of MVBs with the plasma membrane, these internal vesicles are secreted. Exosomes possess a defined set of membrane and cytosolic proteins. The physiological function of exosomes is still a matter of debate, but increasing results in various experimental systems suggest their involvement in multiple biological processes. Because both cell-culture supernatants and biological fluids contain different types of lipid membranes, it is critical to perform high-quality exosome purification. This unit describes different approaches for exosome purification from various sources, and discusses methods to evaluate the purity and homogeneity of the purified exosome preparations.
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                Author and article information

                Contributors
                Journal
                Front Endocrinol (Lausanne)
                Front Endocrinol (Lausanne)
                Front. Endocrinol.
                Frontiers in Endocrinology
                Frontiers Media S.A.
                1664-2392
                10 October 2022
                2022
                : 13
                : 1005639
                Affiliations
                [1] 1 Department of Physiology, Radboud Institute for Molecular Life Sciences, Radboud University Medical Center , Nijmegen, Netherlands
                [2] 2 Department of Biochemistry, Radboud Institute for Molecular Life Sciences, Radboud University Medical Center , Nijmegen, Netherlands
                [3] 3 Electron Microscopy Center, Radboud Institute of Molecular Life Sciences, Radboud University Medical Center , Nijmegen, Netherlands
                [4] 4 Radboud Technology Center for Bioinformatics, Radboud Institute of Molecular Life Sciences, Radboud University Medical Center , Nijmegen, Netherlands
                [5] 5 Department of Clinical Pharmacology and Pharmacoepidemiology, Heidelberg University Hospital , Heidelberg, Germany
                Author notes

                Edited by: Damian G. Romero, University of Mississippi Medical Center, United States

                Reviewed by: Shamroop Kumar Mallela, University of Miami, United States; Natalia Lucia Rukavina Mikusic, Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET) Instituto de Química y Fisicoquímica Biológicas (IQUIFIB), Argentina

                *Correspondence: Joost G. J. Hoenderop, joost.hoenderop@ 123456radboudumc.nl

                This article was submitted to Translational Endocrinology, a section of the journal Frontiers in Endocrinology

                Article
                10.3389/fendo.2022.1005639
                9589111
                36299464
                5081c649-3b8d-4aa3-b491-bbb18674f7fa
                Copyright © 2022 Carotti, van der Wijst, Verschuren, Rutten, Sommerdijk, Kaffa, Sommers, Rigalli and Hoenderop

                This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

                History
                : 28 July 2022
                : 20 September 2022
                Page count
                Figures: 6, Tables: 2, Equations: 0, References: 39, Pages: 12, Words: 4888
                Funding
                Funded by: Deutsche Forschungsgemeinschaft , doi 10.13039/501100001659;
                Award ID: 509856975
                Funded by: HORIZON EUROPE Marie Sklodowska-Curie Actions , doi 10.13039/100018694;
                Funded by: European Research Council , doi 10.13039/501100000781;
                Categories
                Endocrinology
                Original Research

                Endocrinology & Diabetes
                autosomal dominant polycistic kidney disease,adpkd,exosomes,extracellular vesicles,purinergic signaling,extracellular atp

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