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      Engineered yeast tolerance enables efficient production from toxified lignocellulosic feedstocks

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          Abstract

          Rationally engineered tolerance enables broadly efficient lignocellulosic fermentation of diverse feedstocks and bioproducts.

          Abstract

          Lignocellulosic biomass remains unharnessed for the production of renewable fuels and chemicals due to challenges in deconstruction and the toxicity its hydrolysates pose to fermentation microorganisms. Here, we show in Saccharomyces cerevisiae that engineered aldehyde reduction and elevated extracellular potassium and pH are sufficient to enable near-parity production between inhibitor-laden and inhibitor-free feedstocks. By specifically targeting the universal hydrolysate inhibitors, a single strain is enhanced to tolerate a broad diversity of highly toxified genuine feedstocks and consistently achieve industrial-scale titers (cellulosic ethanol of >100 grams per liter when toxified). Furthermore, a functionally orthogonal, lightweight design enables seamless transferability to existing metabolically engineered chassis strains: We endow full, multifeedstock tolerance on a xylose-consuming strain and one producing the biodegradable plastics precursor lactic acid. The demonstration of “drop-in” hydrolysate competence enables the potential of cost-effective, at-scale biomass utilization for cellulosic fuel and nonfuel products alike.

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          Features of promising technologies for pretreatment of lignocellulosic biomass.

          N. Mosier (2005)
          Cellulosic plant material represents an as-of-yet untapped source of fermentable sugars for significant industrial use. Many physio-chemical structural and compositional factors hinder the enzymatic digestibility of cellulose present in lignocellulosic biomass. The goal of any pretreatment technology is to alter or remove structural and compositional impediments to hydrolysis in order to improve the rate of enzyme hydrolysis and increase yields of fermentable sugars from cellulose or hemicellulose. These methods cause physical and/or chemical changes in the plant biomass in order to achieve this result. Experimental investigation of physical changes and chemical reactions that occur during pretreatment is required for the development of effective and mechanistic models that can be used for the rational design of pretreatment processes. Furthermore, pretreatment processing conditions must be tailored to the specific chemical and structural composition of the various, and variable, sources of lignocellulosic biomass. This paper reviews process parameters and their fundamental modes of action for promising pretreatment methods.
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            The biomass distribution on Earth

            Significance The composition of the biosphere is a fundamental question in biology, yet a global quantitative account of the biomass of each taxon is still lacking. We assemble a census of the biomass of all kingdoms of life. This analysis provides a holistic view of the composition of the biosphere and allows us to observe broad patterns over taxonomic categories, geographic locations, and trophic modes.
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              Studies on the transformation of intact yeast cells by the LiAc/SS-DNA/PEG procedure.

              An improved lithium acetate (LiAc)/single-stranded DNA (SS-DNA)/polyethylene glycol (PEG) protocol which yields > 1 x 10(6) transformants/micrograms plasmid DNA and the original protocol described by Schiestl and Gietz (1989) were used to investigate aspects of the mechanism of LiAc/SS-DNA/PEG transformation. The highest transformation efficiency was observed when 1 x 10(8) cells were transformed with 100 ng plasmid DNA in the presence of 50 micrograms SS carrier DNA. The yield of transformants increased linearly up to 5 micrograms plasmid per transformation. A 20-min heat shock at 42 degrees C was necessary for maximal yields. PEG was found to deposit both carrier DNA and plasmid DNA onto cells. SS carrier DNA bound more effectively to the cells and caused tighter binding of 32P-labelled plasmid DNA than did double-stranded (DS) carrier. The LiAc/SS-DNA/PEG transformation method did not result in cell fusion. DS carrier DNA competed with DS vector DNA in the transformation reaction. SS plasmid DNA transformed cells poorly in combination with both SS and DS carrier DNA. The LiAc/SS-DNA/PEG method was shown to be more effective than other treatments known to make cells transformable. A model for the mechanism of transformation by the LiAc/SS-DNA/PEG method is discussed.
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                Author and article information

                Journal
                Sci Adv
                Sci Adv
                SciAdv
                advances
                Science Advances
                American Association for the Advancement of Science
                2375-2548
                June 2021
                25 June 2021
                : 7
                : 26
                : eabf7613
                Affiliations
                [1 ]Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.
                [2 ]Whitehead Institute for Biomedical Research, Cambridge, MA 02142, USA.
                [3 ]National Bioenergy Center, National Renewable Energy Laboratory, Golden, CO 80401, USA.
                Author notes
                [* ]Corresponding author. Email: gregstep@ 123456mit.edu (G.S.); gfink@ 123456wi.mit.edu (G.R.F.)
                [†]

                Present address: Department of Biology and Biological Engineering, Chalmers University of Technology, Göteborg, Sweden.

                Author information
                http://orcid.org/0000-0001-6585-3360
                http://orcid.org/0000-0002-3020-9177
                http://orcid.org/0000-0002-0859-6879
                http://orcid.org/0000-0003-3704-2899
                http://orcid.org/0000-0001-6909-4568
                Article
                abf7613
                10.1126/sciadv.abf7613
                8232913
                34172441
                55ddf069-d9bb-4c88-8614-941fd983b341
                Copyright © 2021 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works. Distributed under a Creative Commons Attribution NonCommercial License 4.0 (CC BY-NC).

                This is an open-access article distributed under the terms of the Creative Commons Attribution-NonCommercial license, which permits use, distribution, and reproduction in any medium, so long as the resultant use is not for commercial advantage and provided the original work is properly cited.

                History
                : 18 November 2020
                : 13 May 2021
                Funding
                Funded by: doi http://dx.doi.org/10.13039/100000002, National Institutes of Health;
                Award ID: R01-GM035010
                Funded by: doi http://dx.doi.org/10.13039/100000015, U.S. Department of Energy;
                Award ID: DE-EE0007531
                Funded by: doi http://dx.doi.org/10.13039/100000015, U.S. Department of Energy;
                Award ID: DE-AC36-08GO28308
                Funded by: doi http://dx.doi.org/10.13039/100000015, U.S. Department of Energy;
                Funded by: doi http://dx.doi.org/10.13039/100006134, Office of Energy Efficiency and Renewable Energy;
                Funded by: doi http://dx.doi.org/10.13039/100011735, Bioenergy Technologies Office;
                Award ID: R01-GM035010
                Funded by: doi http://dx.doi.org/10.13039/100011735, Bioenergy Technologies Office;
                Funded by: Award Number;
                Award ID: DE-EE0007531
                Categories
                Research Article
                Research Articles
                SciAdv r-articles
                Engineering
                Microbiology
                Engineering
                Custom metadata
                Mariane Belen

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