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      Refined human artificial chromosome vectors for gene therapy and animal transgenesis

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          Abstract

          Human artificial chromosomes (HACs) have several advantages as gene therapy vectors, including stable episomal maintenance, and the ability to carry large gene inserts. We previously developed HAC vectors from the normal human chromosomes using a chromosome engineering technique. However, endogenous genes were remained in these HACs, limiting their therapeutic applications. In this study, we refined a HAC vector without endogenous genes from human chromosome 21 in homologous recombination-proficient chicken DT40 cells. The HAC was physically characterized using a transformation-associated recombination (TAR) cloning strategy followed by sequencing of TAR-bacterial artificial chromosome clones. No endogenous genes were remained in the HAC. We demonstrated that any desired gene can be cloned into the HAC using the Cre-loxP system in Chinese hamster ovary cells, or a homologous recombination system in DT40 cells. The HAC can be efficiently transferred to other type of cells including mouse ES cells via microcell-mediated chromosome transfer. The transferred HAC was stably maintained in vitro and in vivo. Furthermore, tumor cells containing a HAC carrying the suicide gene, herpes simplex virus thymidine kinase ( HSV-TK), were selectively killed by ganciclovir in vitro and in vivo. Thus, this novel HAC vector may be useful not only for gene and cell therapy, but also for animal transgenesis.

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          Most cited references36

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          Consed: a graphical tool for sequence finishing.

          Sequencing of large clones or small genomes is generally done by the shotgun approach (Anderson et al. 1982). This has two phases: (1) a shotgun phase in which a number of reads are generated from random subclones and assembled into contigs, followed by (2) a directed, or finishing phase in which the assembly is inspected for correctness and for various kinds of data anomalies (such as contaminant reads, unremoved vector sequence, and chimeric or deleted reads), additional data are collected to close gaps and resolve low quality regions, and editing is performed to correct assembly or base-calling errors. Finishing is currently a bottleneck in large-scale sequencing efforts, and throughput gains will depend both on reducing the need for human intervention and making it as efficient as possible. We have developed a finishing tool, consed, which attempts to implement these principles. A distinguishing feature relative to other programs is the use of error probabilities from our programs phred and phrap as an objective criterion to guide the entire finishing process. More information is available at http:// www.genome.washington.edu/consed/consed. html.
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            The DNA sequence of human chromosome 21.

            Chromosome 21 is the smallest human autosome. An extra copy of chromosome 21 causes Down syndrome, the most frequent genetic cause of significant mental retardation, which affects up to 1 in 700 live births. Several anonymous loci for monogenic disorders and predispositions for common complex disorders have also been mapped to this chromosome, and loss of heterozygosity has been observed in regions associated with solid tumours. Here we report the sequence and gene catalogue of the long arm of chromosome 21. We have sequenced 33,546,361 base pairs (bp) of DNA with very high accuracy, the largest contig being 25,491,867 bp. Only three small clone gaps and seven sequencing gaps remain, comprising about 100 kilobases. Thus, we achieved 99.7% coverage of 21q. We also sequenced 281,116 bp from the short arm. The structural features identified include duplications that are probably involved in chromosomal abnormalities and repeat structures in the telomeric and pericentromeric regions. Analysis of the chromosome revealed 127 known genes, 98 predicted genes and 59 pseudogenes.
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              Germ-line transformation of mice.

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                Author and article information

                Journal
                Gene Ther
                Gene Therapy
                Nature Publishing Group
                0969-7128
                1476-5462
                April 2011
                18 November 2010
                : 18
                : 4
                : 384-393
                Affiliations
                [1 ]simpleDepartment of Biomedical Science, Institute of Regenerative Medicine and Biofunction, Graduate School of Medical Science, Tottori University , Tottori, Japan
                [2 ]simpleChromosome Engineering Research Center, Tottori University , Tottori, Japan
                [3 ]simpleDivision of Human Genome Science, Department of Molecular and Cellular Biology, School of Life Sciences, Faculty of Medicine, Tottori University , Tottori, Japan
                [4 ]simpleDepartment of Molecular and Cellular Biology, School of Life Sciences, Faculty of Medicine, Tottori University , Tottori, Japan
                [5 ]simpleDivision of Regenerative Medicine and Therapeutics, Department of Genetic Medicine and Regenerative Therapeutics, Institute of Regenerative Medicine and Biofunction, Graduate School of Medical Science, Tottori University , Tottori, Japan
                [6 ]simpleDivision of Functional Genomics, Research Center for Bioscience and Technology, Tottori University , Tottori, Japan
                [7 ]simpleSequence Technology Team, RIKEN Genomic Sciences Center , Yokohama, Japan
                [8 ]simpleLaboratory of Molecular Pharmacology, National Cancer Institute , Bethesda, MD, USA
                [9 ]simpleJST, CREST, 5, Sanbancho , Tokyo, Japan
                Author notes
                [* ]simpleDepartment of Biomedical Science, Institute of Regenerative Medicine and Biofunction; Tottori University, Graduate School of Medical Science , 86 Nishi-cho, Yonago, Tottori 683-8503, Japan. E-mail: oshimura@ 123456grape.med.tottori-u.ac.jp
                [10]

                Current address: Comparative Genomics Laboratory, National Institute of Genetics, Yata 1111, Mishima, Shizuoka 411-8540, Japan.

                [11]

                Current address: Toyohashi University of Technology, 1-1, Hibarigaoka, Tenpaku-cho, Toyohashi, Aichi 441-8580, Japan.

                Article
                gt2010147
                10.1038/gt.2010.147
                3125098
                21085194
                586bfc63-2059-4b81-bf8a-8221c0ef9dde
                Copyright © 2011 Macmillan Publishers Limited

                This work is licensed under the Creative Commons Attribution-NonCommercial-No Derivative Works 3.0 Unported License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-nd/3.0/

                History
                : 02 May 2010
                : 19 July 2010
                : 25 September 2010
                Categories
                Original Article

                Molecular medicine
                human artificial chromosome,animal transgenesis,microcell-mediated chromosome transfer

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