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      Secretory Production of the Hericium erinaceus Laccase from Saccharomyces cerevisiae

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          Abstract

          Mushroom laccases play a crucial role in lignin depolymerization, one of the most critical challenges in lignin utilization. Importantly, laccases can utilize a wide range of substrates, such as toxicants and antibiotics. This study isolated a novel laccase, named HeLac4c, from endophytic white-rot fungi Hericium erinaceus mushrooms. The cDNAs for this enzyme were 1569 bp in length and encoded a protein of 523 amino acids, including a 20 amino-acid signal peptide. Active extracellular production of glycosylated laccases from Saccharomyces cerevisiae was successfully achieved by selecting an optimal translational fusion partner. We observed that 5 and 10 mM Ca 2+, Zn 2+, and K + increased laccase activity, whereas 5 mM Fe 2+ and Al 3+ inhibited laccase activity. The laccase activity was inhibited by the addition of low concentrations of sodium azide and L-cysteine. The optimal pH for the 2,2'-Azino-bis(3-ethylbenzothiazoline-6-sulfonic acid) diammonium salt was 4.4. Guaiacylglycerol-β-guaiacyl ether, a lignin model compound, was polymerized by the HeLac4c enzyme. These results indicated that HeLac4c is a novel oxidase biocatalyst for the bioconversion of lignin into value-added products for environmental biotechnological applications.

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          Most cited references31

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          SWISS-MODEL: homology modelling of protein structures and complexes

          Abstract Homology modelling has matured into an important technique in structural biology, significantly contributing to narrowing the gap between known protein sequences and experimentally determined structures. Fully automated workflows and servers simplify and streamline the homology modelling process, also allowing users without a specific computational expertise to generate reliable protein models and have easy access to modelling results, their visualization and interpretation. Here, we present an update to the SWISS-MODEL server, which pioneered the field of automated modelling 25 years ago and been continuously further developed. Recently, its functionality has been extended to the modelling of homo- and heteromeric complexes. Starting from the amino acid sequences of the interacting proteins, both the stoichiometry and the overall structure of the complex are inferred by homology modelling. Other major improvements include the implementation of a new modelling engine, ProMod3 and the introduction a new local model quality estimation method, QMEANDisCo. SWISS-MODEL is freely available at https://swissmodel.expasy.org.
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            The SWISS-MODEL Repository—new features and functionality

            SWISS-MODEL Repository (SMR) is a database of annotated 3D protein structure models generated by the automated SWISS-MODEL homology modeling pipeline. It currently holds >400 000 high quality models covering almost 20% of Swiss-Prot/UniProtKB entries. In this manuscript, we provide an update of features and functionalities which have been implemented recently. We address improvements in target coverage, model quality estimates, functional annotations and improved in-page visualization. We also introduce a new update concept which includes regular updates of an expanded set of core organism models and UniProtKB-based targets, complemented by user-driven on-demand update of individual models. With the new release of the modeling pipeline, SMR has implemented a REST-API and adopted an open licencing model for accessing model coordinates, thus enabling bulk download for groups of targets fostering re-use of models in other contexts. SMR can be accessed at https://swissmodel.expasy.org/repository.
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              Modeling protein quaternary structure of homo- and hetero-oligomers beyond binary interactions by homology

              Cellular processes often depend on interactions between proteins and the formation of macromolecular complexes. The impairment of such interactions can lead to deregulation of pathways resulting in disease states, and it is hence crucial to gain insights into the nature of macromolecular assemblies. Detailed structural knowledge about complexes and protein-protein interactions is growing, but experimentally determined three-dimensional multimeric assemblies are outnumbered by complexes supported by non-structural experimental evidence. Here, we aim to fill this gap by modeling multimeric structures by homology, only using amino acid sequences to infer the stoichiometry and the overall structure of the assembly. We ask which properties of proteins within a family can assist in the prediction of correct quaternary structure. Specifically, we introduce a description of protein-protein interface conservation as a function of evolutionary distance to reduce the noise in deep multiple sequence alignments. We also define a distance measure to structurally compare homologous multimeric protein complexes. This allows us to hierarchically cluster protein structures and quantify the diversity of alternative biological assemblies known today. We find that a combination of conservation scores, structural clustering, and classical interface descriptors, can improve the selection of homologous protein templates leading to reliable models of protein complexes.
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                Author and article information

                Journal
                J Microbiol Biotechnol
                J Microbiol Biotechnol
                Journal of Microbiology and Biotechnology
                The Korean Society for Microbiology and Biotechnology
                1017-7825
                1738-8872
                28 April 2024
                22 January 2024
                22 January 2024
                : 34
                : 4
                : 930-939
                Affiliations
                [1 ]Synthetic Biology Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon 34141, Republic of Korea
                [2 ]Department of Biosystems and Bioengineering, KRIBB School of Biotechnology, Korea National University of Science and Technology (UST), Daejeon 34113, Republic of Korea
                [3 ]Jeonbuk Branch Institute, Korea Research Institute of Bioscience and Biotechnology, Jeongeup 56212, Republic of Korea
                [4 ]Cellapy Bio Inc., Daejeon 34141, Republic of Korea
                Author notes
                [* ] Corresponding authors BH Sung Phone: +82-42-860-4472 Fax: +82-42-860-4458 E-mail: bhsung@ 123456kribb.re.kr
                [†]

                These authors contributed equally to this study.

                Article
                jmb-34-4-930
                10.4014/jmb.2312.12043
                11091700
                38314447
                5a0ee0e7-d0e7-4f71-95f5-735636a12a40
                Copyright © 2024 by the authors. Licensee KMB

                This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license

                History
                : 28 December 2023
                : 1 January 2024
                : 3 January 2024
                Categories
                Research article
                Biotechnology and Bioengineering (BB)
                Whole Cell Biocatalysis and Bioprocess Engineering

                recombinant protein,secretion,laccase,hericium erinaceus,saccharomyces cerevisiae

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