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      Mendel: From genes to genome

      review-article
      , ,
      Plant Physiology
      Oxford University Press

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          Abstract

          Two hundred years after the birth of Gregor Mendel, it is an appropriate time to reflect on recent developments in the discipline of genetics, particularly advances relating to the prescient friar’s model species, the garden pea ( Pisum sativum L.). Mendel’s study of seven characteristics established the laws of segregation and independent assortment. The genes underlying four of Mendel’s loci ( A, LE, I, and R) have been characterized at the molecular level for over a decade. However, the three remaining genes, influencing pod color ( GP), pod form ( V/P), and the position of flowers ( FA/FAS), have remained elusive for a variety of reasons, including a lack of detail regarding the loci with which Mendel worked. Here, we discuss potential candidate genes for these characteristics, in light of recent advances in the genetic resources for pea. These advances, including the pea genome sequence and reverse-genetics techniques, have revitalized pea as an excellent model species for physiological–genetic studies. We also discuss the issues that have been raised with Mendel’s results, such as the recent controversy regarding the discrete nature of the characters that Mendel chose and the perceived overly-good fit of his segregations to his hypotheses. We also consider the relevance of these controversies to his lasting contribution. Finally, we discuss the use of Mendel’s classical results to teach and enthuse future generations of geneticists, not only regarding the core principles of the discipline, but also its history and the role of hypothesis testing.

          Abstract

          The molecular nature of Mendel’s genes, the genetic resources available for pea, pea as a model for teaching and research, and recent controversies about Mendel’s data are discussed.

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          Most cited references121

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          Strigolactone inhibition of shoot branching.

          A carotenoid-derived hormonal signal that inhibits shoot branching in plants has long escaped identification. Strigolactones are compounds thought to be derived from carotenoids and are known to trigger the germination of parasitic plant seeds and stimulate symbiotic fungi. Here we present evidence that carotenoid cleavage dioxygenase 8 shoot branching mutants of pea are strigolactone deficient and that strigolactone application restores the wild-type branching phenotype to ccd8 mutants. Moreover, we show that other branching mutants previously characterized as lacking a response to the branching inhibition signal also lack strigolactone response, and are not deficient in strigolactones. These responses are conserved in Arabidopsis. In agreement with the expected properties of the hormonal signal, exogenous strigolactone can be transported in shoots and act at low concentrations. We suggest that endogenous strigolactones or related compounds inhibit shoot branching in plants. Furthermore, ccd8 mutants demonstrate the diverse effects of strigolactones in shoot branching, mycorrhizal symbiosis and parasitic weed interaction.
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            Genome sequence of the palaeopolyploid soybean.

            Soybean (Glycine max) is one of the most important crop plants for seed protein and oil content, and for its capacity to fix atmospheric nitrogen through symbioses with soil-borne microorganisms. We sequenced the 1.1-gigabase genome by a whole-genome shotgun approach and integrated it with physical and high-density genetic maps to create a chromosome-scale draft sequence assembly. We predict 46,430 protein-coding genes, 70% more than Arabidopsis and similar to the poplar genome which, like soybean, is an ancient polyploid (palaeopolyploid). About 78% of the predicted genes occur in chromosome ends, which comprise less than one-half of the genome but account for nearly all of the genetic recombination. Genome duplications occurred at approximately 59 and 13 million years ago, resulting in a highly duplicated genome with nearly 75% of the genes present in multiple copies. The two duplication events were followed by gene diversification and loss, and numerous chromosome rearrangements. An accurate soybean genome sequence will facilitate the identification of the genetic basis of many soybean traits, and accelerate the creation of improved soybean varieties.
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              The Medicago Genome Provides Insight into the Evolution of Rhizobial Symbioses

              Legumes (Fabaceae or Leguminosae) are unique among cultivated plants for their ability to carry out endosymbiotic nitrogen fixation with rhizobial bacteria, a process that takes place in a specialized structure known as the nodule. Legumes belong to one of the two main groups of eurosids, the Fabidae, which includes most species capable of endosymbiotic nitrogen fixation 1 . Legumes comprise several evolutionary lineages derived from a common ancestor 60 million years ago (Mya). Papilionoids are the largest clade, dating nearly to the origin of legumes and containing most cultivated species 2 . Medicago truncatula (Mt) is a long-established model for the study of legume biology. Here we describe the draft sequence of the Mt euchromatin based on a recently completed BAC-assembly supplemented with Illumina-shotgun sequence, together capturing ~94% of all Mt genes. A whole-genome duplication (WGD) approximately 58 Mya played a major role in shaping the Mt genome and thereby contributed to the evolution of endosymbiotic nitrogen fixation. Subsequent to the WGD, the Mt genome experienced higher levels of rearrangement than two other sequenced legumes, Glycine max (Gm) and Lotus japonicus (Lj). Mt is a close relative of alfalfa (M. sativa), a widely cultivated crop with limited genomics tools and complex autotetraploid genetics. As such, the Mt genome sequence provides significant opportunities to expand alfalfa’s genomic toolbox.
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                Author and article information

                Contributors
                Journal
                Plant Physiol
                Plant Physiol
                plphys
                Plant Physiology
                Oxford University Press
                0032-0889
                1532-2548
                December 2022
                12 September 2022
                12 September 2022
                : 190
                : 4
                : 2103-2114
                Affiliations
                Discipline of Biological Sciences, School of Natural Sciences, University of Tasmania , Sandy Bay, Tasmania 7005, Australia
                Discipline of Biological Sciences, School of Natural Sciences, University of Tasmania , Sandy Bay, Tasmania 7005, Australia
                Discipline of Biological Sciences, School of Natural Sciences, University of Tasmania , Sandy Bay, Tasmania 7005, Australia
                Author notes
                Author for correspondence: jim.reid@ 123456utas.edu.au
                Author information
                https://orcid.org/0000-0002-8659-1125
                https://orcid.org/0000-0003-3665-2062
                https://orcid.org/0000-0003-4317-0977
                Article
                kiac424
                10.1093/plphys/kiac424
                9706470
                36094356
                5a605164-35c0-463c-b0f6-bc854190a2ce
                © The Author(s) 2022. Published by Oxford University Press on behalf of American Society of Plant Biologists.

                This is an Open Access article distributed under the terms of the Creative Commons Attribution License ( https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.

                History
                : 25 July 2022
                : 22 August 2022
                : 22 September 2022
                Page count
                Pages: 12
                Funding
                Funded by: Australian Research Council Discovery Early Career Award;
                Award ID: DE200101133
                Funded by: Australian Government, DOI 10.13039/100015539;
                Categories
                Update
                Genes, Development and Evolution
                AcademicSubjects/SCI02286
                AcademicSubjects/SCI02287
                AcademicSubjects/SCI01270
                AcademicSubjects/SCI01280
                AcademicSubjects/SCI02288

                Plant science & Botany
                Plant science & Botany

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