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      Novel structural arrangement of nematode cystathionine β-synthases: characterization of Caenorhabditis elegans CBS-1

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          Abstract

          CBSs (cystathionine β-synthases) are eukaryotic PLP (pyridoxal 5 *-phosphate)-dependent proteins that maintain cellular homocysteine homoeostasis and produce cystathionine and hydrogen sulfide. In the present study, we describe a novel structural arrangement of the CBS enzyme encoded by the cbs-1 gene of the nematode Caenorhabditis elegans. The CBS-1 protein contains a unique tandem repeat of two evolutionarily conserved catalytic regions in a single polypeptide chain. These repeats include a catalytically active C-terminal module containing a PLP-binding site and a less conserved N-terminal module that is unable to bind the PLP cofactor and cannot catalyse CBS reactions, as demonstrated by analysis of truncated variants and active-site mutant proteins. In contrast with other metazoan enzymes, CBS-1 lacks the haem and regulatory Bateman domain essential for activation by AdoMet ( S-adenosylmethionine) and only forms monomers. We determined the tissue and subcellular distribution of CBS-1 and showed that cbs-1 knockdown by RNA interference leads to delayed development and to an approximately 10-fold elevation of homocysteine concentrations in nematode extracts. The present study provides the first insight into the metabolism of sulfur amino acids and hydrogen sulfide in C. elegans and shows that nematode CBSs possess a structural feature that is unique among CBS proteins.

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          Multiple sequence alignment with the Clustal series of programs.

          R Chenna (2003)
          The Clustal series of programs are widely used in molecular biology for the multiple alignment of both nucleic acid and protein sequences and for preparing phylogenetic trees. The popularity of the programs depends on a number of factors, including not only the accuracy of the results, but also the robustness, portability and user-friendliness of the programs. New features include NEXUS and FASTA format output, printing range numbers and faster tree calculation. Although, Clustal was originally developed to run on a local computer, numerous Web servers have been set up, notably at the EBI (European Bioinformatics Institute) (http://www.ebi.ac.uk/clustalw/).
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            Finding function in novel targets: C. elegans as a model organism.

            Despite its apparent simplicity, the nematode worm Caenorhabditis elegans has developed into an important model for biomedical research, particularly in the functional characterization of novel drug targets that have been identified using genomics technologies. The cellular complexity and the conservation of disease pathways between C. elegans and higher organisms, together with the simplicity and cost-effectiveness of cultivation, make for an effective in vivo model that is amenable to whole-organism high-throughput compound screens and large-scale target validation. This review describes how C. elegans models can be used to advance our understanding of the molecular mechanisms of drug action and disease pathogenesis.
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              DNA transformation.

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                Author and article information

                Journal
                Biochem J
                Biochem. J
                bic
                BJ
                Biochemical Journal
                Portland Press Ltd.
                0264-6021
                1470-8728
                13 January 2012
                27 March 2012
                15 April 2012
                : 443
                : Pt 2
                : 535-547
                Affiliations
                Institute of Inherited Metabolic Disorders, Charles University in Prague, First Faculty of Medicine and General University Hospital, Ke Karlovu 2, 128 08, Praha 2, Czech Republic
                Author notes
                1To whom correspondence should be addressed (email Viktor.Kozich@ 123456LF1.cuni.cz ).
                Article
                BJ20111478
                10.1042/BJ20111478
                3316156
                22240119
                5b4ecd4a-80de-45a3-b9ee-dc752ade7c8a
                © 2012 The Author(s) The author(s) has paid for this article to be freely available under the terms of the Creative Commons Attribution Non-Commercial Licence (http://creativecommons.org/licenses/by-nc/2.5/) which permits unrestricted non-commercial use, distribution and reproduction in any medium, provided the original work is properly cited.

                This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

                History
                : 15 August 2011
                : 13 December 2011
                : 13 January 2012
                Page count
                Figures: 6, Tables: 2, References: 59, Pages: 13
                Categories
                Research Article

                Biochemistry
                homocysteine,cgl, cystathionine γ-lyase,cbs, cystathionine β-synthase,utr, untranslated region,bs3, bis(sulfosuccinimidyl) suberate,rnai, rna interference,dtt, dithiothreitol,knockdown,caenorhabditis elegans,rt, reverse transcription,sec, size-exclusion chromatography,plp, pyridoxal 5*-phosphate,lc–ms/ms, liquid chromatography–tandem ms,domain architecture,hydrogen sulfide,wt, wild-type,adomet, s-adenosylmethionine,bn, blue native,cystathionine β-synthase (cbs),est, expressed sequence tag,gfp, green fluorescent protein

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