49
views
0
recommends
+1 Recommend
1 collections
    0
    shares
      • Record: found
      • Abstract: found
      • Article: found
      Is Open Access

      Distinct microbial populations are tightly linked to the profile of dissolved iron in the methanic sediments of the Helgoland mud area, North Sea

      research-article

      Read this article at

      Bookmark
          There is no author summary for this article yet. Authors can add summaries to their articles on ScienceOpen to make them more accessible to a non-specialist audience.

          Abstract

          Iron reduction in subseafloor sulfate-depleted and methane-rich marine sediments is currently a subject of interest in subsurface geomicrobiology. While iron reduction and microorganisms involved have been well studied in marine surface sediments, little is known about microorganisms responsible for iron reduction in deep methanic sediments. Here, we used quantitative PCR-based 16S rRNA gene copy numbers and pyrosequencing-based relative abundances of bacteria and archaea to investigate covariance between distinct microbial populations and specific geochemical profiles in the top 5 m of sediment cores from the Helgoland mud area, North Sea. We found that gene copy numbers of bacteria and archaea were specifically higher around the peak of dissolved iron in the methanic zone (250–350 cm). The higher copy numbers at these depths were also reflected by the relative sequence abundances of members of the candidate division JS1, methanogenic and Methanohalobium/ANME-3 related archaea. The distribution of these populations was strongly correlated to the profile of pore-water Fe 2+ while that of Desulfobacteraceae corresponded to the pore-water sulfate profile. Furthermore, specific JS1 populations also strongly co-varied with the distribution of Methanosaetaceae in the methanic zone. Our data suggest that the interplay among JS1 bacteria, methanogenic archaea and Methanohalobium/ANME-3-related archaea may be important for iron reduction and methane cycling in deep methanic sediments of the Helgoland mud area and perhaps in other methane-rich depositional environments.

          Related collections

          Most cited references57

          • Record: found
          • Abstract: found
          • Article: not found

          Distributions of microbial activities in deep subseafloor sediments.

          S D'Hondt (2004)
          Diverse microbial communities and numerous energy-yielding activities occur in deeply buried sediments of the eastern Pacific Ocean. Distributions of metabolic activities often deviate from the standard model. Rates of activities, cell concentrations, and populations of cultured bacteria vary consistently from one subseafloor environment to another. Net rates of major activities principally rely on electron acceptors and electron donors from the photosynthetic surface world. At open-ocean sites, nitrate and oxygen are supplied to the deepest sedimentary communities through the underlying basaltic aquifer. In turn, these sedimentary communities may supply dissolved electron donors and nutrients to the underlying crustal biosphere.
            Bookmark
            • Record: found
            • Abstract: found
            • Article: not found

            Biogeographical distribution and diversity of microbes in methane hydrate-bearing deep marine sediments on the Pacific Ocean Margin.

            The deep subseafloor biosphere is among the least-understood habitats on Earth, even though the huge microbial biomass therein plays an important role for potential long-term controls on global biogeochemical cycles. We report here the vertical and geographical distribution of microbes and their phylogenetic diversities in deeply buried marine sediments of the Pacific Ocean Margins. During the Ocean Drilling Program Legs 201 and 204, we obtained sediment cores from the Peru and Cascadia Margins that varied with respect to the presence of dissolved methane and methane hydrate. To examine differences in prokaryotic distribution patterns in sediments with or without methane hydrates, we studied >2,800 clones possessing partial sequences (400-500 bp) of the 16S rRNA gene and 348 representative clone sequences (approximately 1 kbp) from the two geographically separated subseafloor environments. Archaea of the uncultivated Deep-Sea Archaeal Group were consistently the dominant phylotype in sediments associated with methane hydrate. Sediment cores lacking methane hydrates displayed few or no Deep-Sea Archaeal Group phylotypes. Bacterial communities in the methane hydrate-bearing sediments were dominated by members of the JS1 group, Planctomycetes, and Chloroflexi. Results from cluster and principal component analyses, which include previously reported data from the West and East Pacific Margins, suggest that, for these locations in the Pacific Ocean, prokaryotic communities from methane hydrate-bearing sediment cores are distinct from those in hydrate-free cores. The recognition of which microbial groups prevail under distinctive subseafloor environments is a significant step toward determining the role these communities play in Earth's essential biogeochemical processes.
              Bookmark
              • Record: found
              • Abstract: found
              • Article: not found

              Methane-consuming archaebacteria in marine sediments.

              Large amounts of methane are produced in marine sediments but are then consumed before contacting aerobic waters or the atmosphere. Although no organism that can consume methane anaerobically has ever been isolated, biogeochemical evidence indicates that the overall process involves a transfer of electrons from methane to sulphate and is probably mediated by several organisms, including a methanogen (operating in reverse) and a sulphate-reducer (using an unknown intermediate substrate). Here we describe studies of sediments related to a decomposing methane hydrate. These provide strong evidence that methane is being consumed by archaebacteria that are phylogenetically distinct from known methanogens. Specifically, lipid biomarkers that are commonly characteristic of archaea are so strongly depleted in carbon-13 that methane must be the carbon source, rather than the metabolic product, for the organisms that have produced them. Parallel gene surveys of small-subunit ribosomal RNA (16S rRNA) indicate the predominance of a new archael group which is peripherally related to the methanogenic orders Methanomicrobiales and Methanosarcinales.
                Bookmark

                Author and article information

                Contributors
                Journal
                Front Microbiol
                Front Microbiol
                Front. Microbiol.
                Frontiers in Microbiology
                Frontiers Media S.A.
                1664-302X
                01 May 2015
                2015
                : 6
                : 365
                Affiliations
                [1] 1Microbial Ecophysiology Group, Faculty of Biology/Chemistry, University of Bremen Bremen, Germany
                [2] 2MARUM, Center for Marine Environmental Sciences, University of Bremen Bremen, Germany
                [3] 3Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research Bremerhaven, Germany
                [4] 4Institute for Inorganic and Analytical Chemistry, Johannes Gutenberg University Mainz, Germany
                [5] 5Department of Chemistry, Taras Shevchenko National University of Kyiv Kyiv, Ukraine
                [6] 6CFisUC, Department of Physics, University of Coimbra, Coimbra Portugal
                Author notes

                Edited by: David Emerson, Bigelow Laboratory for Ocean Sciences, USA

                Reviewed by: Mustafa Yucel, GEOMAR – Helmholtz Centre for Ocean Research Kiel, Germany; Jeffrey M. Dick, Chiang Mai University, Thailand

                *Correspondence: Michael W. Friedrich, Microbial Ecophysiology Group, Faculty of Biology/Chemistry, University of Bremen, Leobener Straße, 28359 Bremen, Germany michael.friedrich@ 123456uni-bremen.de

                This article was submitted to Microbiological Chemistry and Geomicrobiology, a section of the journal Frontiers in Microbiology.

                Article
                10.3389/fmicb.2015.00365
                4416451
                25983723
                5e1c8668-45ff-4068-bce6-8ba100e4708b
                Copyright © 2015 Oni, Miyatake, Kasten, Richter-Heitmann, Fischer, Wagenknecht, Kulkarni, Blumers, Shylin, Ksenofontov, Costa, Klingelhöfer and Friedrich.

                This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

                History
                : 26 January 2015
                : 10 April 2015
                Page count
                Figures: 9, Tables: 4, Equations: 0, References: 79, Pages: 15, Words: 0
                Categories
                Microbiology
                Original Research

                Microbiology & Virology
                candidate division js1,iron reduction,methanogens,anme,subsurface sediments,north sea,smt,anaerobic oxidation of methane

                Comments

                Comment on this article