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      Conformational Re‐engineering of Porphyrins as Receptors with Switchable N−H⋅⋅⋅X‐Type Binding Modes

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          Abstract

          The selectivity and functional variability of porphyrin cofactors are typically based on substrate binding of metalloporphyrins wherein the pyrrole nitrogen units only serve to chelate the metal ions. Yet, using the porphyrin inner core system for other functions is possible through conformational engineering. As a first step towards porphyrin “enzyme‐like” active centers, a structural and spectroscopic study of substrate binding to the inner core porphyrin system shows that a highly saddle‐distorted porphyrin with peripheral amino receptor groups ( 1, 2,3,7,8,12,13,17,18‐octaethyl‐5,10,15,20‐tetrakis(2‐aminophenyl)porphyrin) coordinates analytes in a switchable manner dependent on the acidity of the solution. The supramolecular ensemble exhibits exceptionally high affinity to and selectivity for the pyrophosphate anion (2.26±0.021)×10 9m −1. 1H NMR spectroscopic studies provided insight into the likely mode of binding and the characterization of atropisomers, all four of which were also studied by X‐ray crystallography.

          Abstract

          An acid‐activated porphyrin probe for small‐molecule detection is demonstrated, highlighting the colorimetric change of the binding event. The key feature is substrate coordination to the inner core system assisted via peripheral interactions.

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          Most cited references55

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          Real-time DNA sequencing using detection of pyrophosphate release.

          An approach for real-time DNA sequencing without the need for electrophoresis has been developed. The approach relies on the detection of DNA polymerase activity by an enzymatic luminometric inorganic pyrophosphate (PPi) detection assay (ELIDA) (Nyrén, P. (1987) Anal. Biochem. 167, 235-238). The PPi formed in the DNA polymerase reaction is converted to ATP by ATP sulfurylase and the ATP production is continuously monitored by the firefly luciferase. In the sequencing procedure, immobilized single-stranded template was used in a repeated cycle of deoxynucleotide extension. Real-time signals in the ELIDA, proportional to the amount of incorporated nucleotide, were observed when complementary bases were incorporated. An increased signal-to-noise ratio was obtained by substitution of deoxyadenosine alpha-thiotriphosphate (dATP alpha S) for the natural deoxyadenosine triphosphate, dATP alpha S is efficiently used by the DNA polymerase, but is not recognized by the luciferase. As a model, 15 bases of a single-stranded PCR product were sequenced. The possibility for parallel processing of many samples in an automated manner is discussed.
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            Rothemund and Adler-Longo reactions revisited: synthesis of tetraphenylporphyrins under equilibrium conditions

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              Spectra of porphyrins

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                Author and article information

                Contributors
                sengem@tcd.ie
                Journal
                Angew Chem Int Ed Engl
                Angew. Chem. Int. Ed. Engl
                10.1002/(ISSN)1521-3773
                ANIE
                Angewandte Chemie (International Ed. in English)
                John Wiley and Sons Inc. (Hoboken )
                1433-7851
                1521-3773
                24 September 2019
                11 November 2019
                : 58
                : 46 ( doiID: 10.1002/anie.v58.46 )
                : 16553-16557
                Affiliations
                [ 1 ] School of Chemistry SFI Tetrapyrrole Laboratory Trinity Biomedical Sciences Institute Trinity College Dublin The University of Dublin 152–160 Pearse Street Dublin 2 Ireland
                [ 2 ] Institute for Advanced Study (TUM-IAS) Technische Universität München Lichtenberg-Str. 2a 85748 Garching Germany
                Author information
                http://orcid.org/0000-0003-3219-8739
                http://orcid.org/0000-0003-1656-3177
                http://orcid.org/0000-0002-7467-1654
                Article
                ANIE201907929
                10.1002/anie.201907929
                6899560
                31412154
                5faeb3c2-bfa3-4e4a-ba6e-549efa57fe02
                © 2019 The Authors. Published by Wiley-VCH Verlag GmbH & Co. KGaA.

                This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.

                History
                : 25 June 2019
                : 07 August 2019
                Page count
                Figures: 6, Tables: 1, References: 73, Pages: 5, Words: 0
                Funding
                Funded by: Science Foundation Ireland , open-funder-registry 10.13039/501100001602;
                Award ID: IvP 13/IA/1894
                Funded by: Irish Research Council , open-funder-registry 10.13039/501100002081;
                Award ID: GOIPG 2017/1172
                Funded by: Technische Universität München , open-funder-registry 10.13039/501100005713;
                Award ID: August-Wilhelm Scheer Professorship
                Funded by: H2020 Future and Emerging Technologies , open-funder-registry 10.13039/100010664;
                Award ID: 828779
                Categories
                Communication
                Communications
                Porphyrins | Hot Paper
                Custom metadata
                2.0
                November 11, 2019
                Converter:WILEY_ML3GV2_TO_JATSPMC version:5.7.2 mode:remove_FC converted:05.12.2019

                Chemistry
                conformational design,nonplanar porphyrins,porphyrinoids,pyrophosphate,sensors
                Chemistry
                conformational design, nonplanar porphyrins, porphyrinoids, pyrophosphate, sensors

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