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      Bi‐allelic pathogenic variants in PABPC1L cause oocyte maturation arrest and female infertility

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          Abstract

          Oocyte maturation arrest is one of the important causes of female infertility, but the genetic factors remain largely unknown. PABPC1L, a predominant poly(A)‐binding protein in Xenopus, mouse, and human oocytes and early embryos prior to zygotic genome activation, plays a key role in translational activation of maternal mRNAs. Here, we identified compound heterozygous and homozygous variants in PABPC1L that are responsible for female infertility mainly characterized by oocyte maturation arrest in five individuals. In vitro studies demonstrated that these variants resulted in truncated proteins, reduced protein abundance, altered cytoplasmic localization, and reduced mRNA translational activation by affecting the binding of PABPC1L to mRNA. In vivo, three strains of Pabpc1l knock‐in (KI) female mice were infertile. RNA‐sequencing analysis showed abnormal activation of the Mos‐MAPK pathway in the zygotes of KI mice. Finally, we activated this pathway in mouse zygotes by injecting human MOS mRNA, and this mimicked the phenotype of KI mice. Our findings reveal the important roles of PABPC1L in human oocyte maturation and add a genetic potential candidate gene to be screened for causes of infertility.

          Abstract

          Seven rare variants in PABPC1L were identified in five infertile females mainly characterized by oocyte maturation arrest followed a recessive inheritance pattern. In vitro and in vivo functional studies confirmed the destructive effects and pathogenicity of PABPC1L variants.

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          Exome sequencing in amyotrophic lateral sclerosis identifies risk genes and pathways.

          Amyotrophic lateral sclerosis (ALS) is a devastating neurological disease with no effective treatment. We report the results of a moderate-scale sequencing study aimed at increasing the number of genes known to contribute to predisposition for ALS. We performed whole-exome sequencing of 2869 ALS patients and 6405 controls. Several known ALS genes were found to be associated, and TBK1 (the gene encoding TANK-binding kinase 1) was identified as an ALS gene. TBK1 is known to bind to and phosphorylate a number of proteins involved in innate immunity and autophagy, including optineurin (OPTN) and p62 (SQSTM1/sequestosome), both of which have also been implicated in ALS. These observations reveal a key role of the autophagic pathway in ALS and suggest specific targets for therapeutic intervention. Copyright © 2015, American Association for the Advancement of Science.
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            Whole-genome sequencing of patients with rare diseases in a national health system

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              Burden Testing of Rare Variants Identified through Exome Sequencing via Publicly Available Control Data

              The genetic causes of many Mendelian disorders remain undefined. Factors such as lack of large multiplex families, locus heterogeneity, and incomplete penetrance hamper these efforts for many disorders. Previous work suggests that gene-based burden testing—where the aggregate burden of rare, protein-altering variants in each gene is compared between case and control subjects—might overcome some of these limitations. The increasing availability of large-scale public sequencing databases such as Genome Aggregation Database (gnomAD) can enable burden testing using these databases as controls, obviating the need for additional control sequencing for each study. However, there exist various challenges with using public databases as controls, including lack of individual-level data, differences in ancestry, and differences in sequencing platforms and data processing. To illustrate the approach of using public data as controls, we analyzed whole-exome sequencing data from 393 individuals with idiopathic hypogonadotropic hypogonadism (IHH), a rare disorder with significant locus heterogeneity and incomplete penetrance against control subjects from gnomAD (n = 123,136). We leveraged presumably benign synonymous variants to calibrate our approach. Through iterative analyses, we systematically addressed and overcame various sources of artifact that can arise when using public control data. In particular, we introduce an approach for highly adaptable variant quality filtering that leads to well-calibrated results. Our approach “re-discovered” genes previously implicated in IHH ( FGFR1 , TACR3 , GNRHR ). Furthermore, we identified a significant burden in TYRO3 , a gene implicated in hypogonadotropic hypogonadism in mice. Finally, we developed a user-friendly software package TRAPD (Test Rare vAriants with Public Data) for performing gene-based burden testing against public databases.
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                Author and article information

                Contributors
                linggf@hotmail.com
                wangleiwanglei@fudan.edu.cn
                Journal
                EMBO Mol Med
                EMBO Mol Med
                10.1002/(ISSN)1757-4684
                EMMM
                embomm
                EMBO Molecular Medicine
                John Wiley and Sons Inc. (Hoboken )
                1757-4676
                1757-4684
                13 April 2023
                June 2023
                : 15
                : 6 ( doiID: 10.1002/emmm.v15.6 )
                : e17177
                Affiliations
                [ 1 ] Institute of Pediatrics, Children’s Hospital of Fudan University, the Shanghai Key Laboratory of Medical Epigenetics, the Institutes of Biomedical Sciences, the State Key Laboratory of Genetic Engineering, Fudan University Shanghai China
                [ 2 ] Clinical Research Center for Reproduction and Genetics in Hunan Province, Reproductive and Genetic Hospital of CITIC‐Xiangya Changsha China
                [ 3 ] Reproductive Medicine Center, Shaanxi Maternal and Child Care Service Center Xi'an China
                [ 4 ] Human Phenome Institute, Fudan University Shanghai China
                [ 5 ] NHC Key Lab of Reproduction Regulation (Shanghai Institute for Biomedical and Pharmaceutical Technologies) Fudan University Shanghai China
                [ 6 ] Shanghai Ji Ai Genetics and IVF Institute, Obstetrics and Gynecology Hospital Fudan University Shanghai China
                [ 7 ] Bio‐X Center, Key Laboratory for the Genetics of Developmental and Neuropsychiatric Disorders, Ministry of Education Shanghai Jiao Tong University Shanghai China
                Author notes
                [*] [* ] Corresponding author. Tel: +86 13187057355; E‐mail: linggf@ 123456hotmail.com

                Corresponding author. Tel: +86 21 54237860; E‐mail: wangleiwanglei@ 123456fudan.edu.cn

                [ † ]

                These authors contributed equally to this work

                Author information
                https://orcid.org/0000-0002-5717-1818
                https://orcid.org/0000-0002-2595-7314
                https://orcid.org/0000-0002-4734-712X
                https://orcid.org/0000-0002-9921-2155
                https://orcid.org/0000-0002-4725-883X
                https://orcid.org/0000-0002-4295-7172
                https://orcid.org/0000-0002-1678-7763
                https://orcid.org/0000-0002-9895-1394
                https://orcid.org/0000-0002-3877-2546
                https://orcid.org/0000-0002-3400-0434
                Article
                EMMM202217177
                10.15252/emmm.202217177
                10245037
                37052235
                63743595-c0cd-45aa-b3cd-fc607114e31d
                © 2023 The Authors. Published under the terms of the CC BY 4.0 license

                This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.

                History
                : 27 March 2023
                : 15 November 2022
                : 29 March 2023
                Page count
                Figures: 11, Tables: 2, Pages: 19, Words: 13305
                Funding
                Funded by: the National Natural Science Foundation of China , doi 10.13039/501100001809;
                Award ID: 82288102
                Award ID: 32130029
                Award ID: 82171643
                Award ID: 81971450
                Award ID: 82201829
                Funded by: the China Postdoctoral Science Foundation
                Award ID: 2021M700829
                Funded by: the Medical Engineering Fund of Fudan University
                Award ID: yg2021‐012
                Funded by: the National Key Research and Development Program of China
                Award ID: 2021YFC2700100
                Funded by: the Open Research Funds of the State Key Laboratory of Genetic Engineering, Fudan University
                Award ID: SKLGE‐2106
                Categories
                Article
                Articles
                Custom metadata
                2.0
                07 June 2023
                Converter:WILEY_ML3GV2_TO_JATSPMC version:6.2.8 mode:remove_FC converted:07.06.2023

                Molecular medicine
                female infertility,mos‐mapk,mrna translational activation,oocyte maturation arrest,pabpc1l,genetics, gene therapy & genetic disease,urogenital system

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