[1
]ISNI 0000 0001 2162 1699, GRID grid.7340.0, The Milner Centre for Evolution, , University of Bath, ; Claverton Down Bath, BA2 7AY UK
[2
]ISNI 0000 0001 0658 8800, GRID grid.4827.9, Swansea University Medical School, , Swansea University, ; Singleton Campus Swansea, SA2 8PP UK
[3
]ISNI 0000 0004 0410 2071, GRID grid.7737.4, Department of Mathematics and Statistics, , University of Helsinki, ; Helsinki, 00100 Finland
[4
]ISNI 0000 0001 2220 1880, GRID grid.410795.e, Antimicrobial Resistance Research Center, , National Institute of Infectious Diseases, ; Tokyo, 162-8640 Japan
[5
]MRC Cloud-based Infrastructure for Microbial Bioinformatics (CLIMB) Consortium, Bath,
BA2 7AY UK
[6
]ISNI 0000 0000 9039 7662, GRID grid.7132.7, Integrative Research Centre for Veterinary Preventive Medicine, , Faculty of Veterinary Medicine, Chiang Mai University, ; Chiang Mai, 50200 Thailand
[7
]ISNI 0000 0000 9291 0538, GRID grid.411558.c, Graduate School, , Maejo University, ; Chiang Mai, 50290 Thailand
[8
]ISNI 0000 0004 0618 0495, GRID grid.418048.1, AO Research Institute Davos, ; Davos, 7270 Switzerland
[9
]ISNI 0000 0004 1936 8948, GRID grid.4991.5, Wellcome Centre for Human Genetics, , University of Oxford, ; Oxford, OX3 7BN UK
[10
]ISNI 0000 0004 1936 8948, GRID grid.4991.5, Department of Zoology, , University of Oxford, ; Oxford, OX1 3SZ UK
[11
]GRID grid.410567.1, Department of Orthopaedic Surgery and Traumatology, , University Hospital Basel, ; Basel, 4031 Switzerland
[12
]ISNI 0000 0001 2113 8111, GRID grid.7445.2, Department of Infectious Disease Epidemiology, , Imperial College, ; London, SW7 2AZ UK
[13
]ISNI 0000000121511713, GRID grid.10772.33, Laboratory of Molecular Genetics, Instituto de Tecnologia Química e Biológica, , Universidade Nova de Lisboa, ; Oeiras, 2775-412 Portugal
[14
]ISNI 0000 0001 2166 1519, GRID grid.134907.8, Laboratory of Microbiology and Infectious Diseases, , The Rockefeller University, New York, ; New York, 10065 USA
[15
]ISNI 0000 0001 2287 2617, GRID grid.9026.d, Institut für Medizinische Mikrobiologie, Virologie & Hygiene, , Universität Hamburg, ; Hamburg, 20246 Germany
[16
]ISNI 0000 0004 1936 7603, GRID grid.5337.2, School of Cellular and Molecular Medicine, , University of Bristol, ; Bristol, BS8 1TD UK
[17
]Bioscientia Labor Ingelheim, Institut für Medizinische Diagnostik GmbH, Ingelheim,
55218 Germany
[18
]ISNI 0000 0004 1936 8921, GRID grid.5510.1, Department of Biostatistics, , University of Oslo, ; Oslo, 0372 Norway
[19
]ISNI 0000 0004 0606 5382, GRID grid.10306.34, Pathogen Genomics, , Wellcome Trust Sanger Institute, ; Hinxton, CB10 1SA UK
[20
]ISNI 0000 0001 0930 2361, GRID grid.4514.4, Present Address: Medical Protein Chemistry, Department of Translational Medicine,
, Lund University, ; Malmö, 205 02 Sweden
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