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      A cell-active cyclic peptide targeting the Nrf2/Keap1 protein–protein interaction†

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          Abstract

          The disruption of the protein–protein interaction (PPI) between Nrf2 and Keap1 is an attractive strategy to counteract the oxidative stress that characterises a variety of severe diseases. Peptides represent a complementary approach to small molecules for the inhibition of this therapeutically important PPI. However, due to their polar nature and the negative net charge required for binding to Keap1, the peptides reported to date exhibit either mid-micromolar activity or are inactive in cells. Herein, we present a two-component peptide stapling strategy to rapidly access a variety of constrained and functionalised peptides that target the Nrf2/Keap1 PPI. The most promising peptide, P8-H containing a fatty acid tag, binds to Keap1 with nanomolar affinity and is effective at inducing transcription of ARE genes in a human lung epithelial cell line at sub-micromolar concentration. Furthermore, crystallography of the peptide in complex with Keap1 yielded a high resolution X-ray structure, adding to the toolbox of structures available to develop cell-permeable peptidomimetic inhibitors.

          Abstract

          Application of DVP stapling methodology to efficiently develop Nrf2 peptides with nM activity in enzymatic assays, submicromolar activity in cells and non-cytotoxicity, characterised by high resolution X-ray co-crystallography.

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          Monoacidic Inhibitors of the Kelch-like ECH-Associated Protein 1: Nuclear Factor Erythroid 2-Related Factor 2 (KEAP1:NRF2) Protein-Protein Interaction with High Cell Potency Identified by Fragment-Based Discovery.

          KEAP1 is the key regulator of the NRF2-mediated cytoprotective response, and increasingly recognized as a target for diseases involving oxidative stress. Pharmacological intervention has focused on molecules that decrease NRF2-ubiquitination through covalent modification of KEAP1 cysteine residues, but such electrophilic compounds lack selectivity and may be associated with off-target toxicity. We report here the first use of a fragment-based approach to directly target the KEAP1 Kelch-NRF2 interaction. X-ray crystallographic screening identified three distinct "hot-spots" for fragment binding within the NRF2 binding pocket of KEAP1, allowing progression of a weak fragment hit to molecules with nanomolar affinity for KEAP1 while maintaining drug-like properties. This work resulted in a promising lead compound which exhibits tight and selective binding to KEAP1, and activates the NRF2 antioxidant response in cellular and in vivo models, thereby providing a high quality chemical probe to explore the therapeutic potential of disrupting the KEAP1-NRF2 interaction.
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            Prodrugs of Carboxylic Acids

            Hans Maag (2007)
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              Optimization of linear and cyclic peptide inhibitors of KEAP1-NRF2 protein-protein interaction.

              Inhibition of KEAP1-NRF2 protein-protein interaction is considered a promising strategy to selectively and effectively activate NRF2, a transcription factor which is involved in several pathologies such as Huntington's disease (HD). A library of linear peptides based on the NRF2-binding motifs was generated on the nonapeptide lead Ac-LDEETGEFL-NH2 spanning residues 76-84 of the Neh2 domain of NRF2 with the aim to replace E78, E79 and E82 with non-acidic amino acids. A deeper understanding of the features and accessibility of the T80 subpocket was also targeted by structure-based design. Approaches to improve cell permeability were investigated using both different classes of cyclic peptides and conjugation to cell-penetrating peptides. This insight will guide future design of macrocycles, peptido-mimetics and, most importantly, small neutral brain-penetrating molecules to evaluate whether NRF2 activators have utility in HD.
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                Author and article information

                Journal
                Chem Sci
                Chem Sci
                SC
                CSHCBM
                Chemical Science
                The Royal Society of Chemistry
                2041-6520
                2041-6539
                20 September 2023
                11 October 2023
                20 September 2023
                : 14
                : 39
                : 10800-10805
                Affiliations
                [a ] Yusuf Hamied Department of Chemistry Lensfield Road CB2 1EW Cambridge UK spring@ 123456ch.cam.ac.uk
                [b ] Department of Organic Chemistry, Palacky University Olomouc Tr. 17. Listopadu 12 77900 Olomouc Czech Republic
                [c ] Mechanistic and Structural Biology, Discovery Sciences, BioPharmaceuticals R&D, AstraZeneca Pepparedsleden 1 43183 Gothenburg Sweden
                [d ] BioScience, Research & Early Development, Respiratory & Immunology, BioPharmaceuticals R&D, AstraZeneca Pepparedsleden 1 43183 Gothenburg Sweden
                [e ] Medicinal Chemistry, Research & Early Development, Respiratory & Immunology, BioPharmaceuticals R&D, AstraZeneca Pepparedsleden 1 43183 Gothenburg Sweden frank.narjes@ 123456astrazeneca.com
                Author notes
                [‡]

                These authors contributed equally.

                Author information
                https://orcid.org/0000-0002-9074-653X
                https://orcid.org/0000-0003-0139-2360
                https://orcid.org/0000-0002-5456-3269
                https://orcid.org/0000-0002-3846-6637
                https://orcid.org/0000-0002-3104-7771
                https://orcid.org/0000-0001-7355-2824
                Article
                d3sc04083f
                10.1039/d3sc04083f
                10566475
                37829032
                7466cf88-8f2f-43fa-83d0-b90e9efb4084
                This journal is © The Royal Society of Chemistry
                History
                : 5 August 2023
                : 19 September 2023
                Page count
                Pages: 6
                Funding
                Funded by: UK Research and Innovation, doi 10.13039/100014013;
                Award ID: Unassigned
                Funded by: AstraZeneca, doi 10.13039/100004325;
                Award ID: Unassigned
                Funded by: Engineering and Physical Sciences Research Council, doi 10.13039/501100000266;
                Award ID: Unassigned
                Funded by: Wellcome Trust, doi 10.13039/100010269;
                Award ID: Unassigned
                Funded by: Isaac Newton Trust, doi 10.13039/501100004815;
                Award ID: 22.39(l)
                Funded by: Grantová Agentura České Republiky, doi 10.13039/501100001824;
                Award ID: GA CR 22-07138O
                Funded by: Nadace Experientia, doi 10.13039/100013994;
                Award ID: Unassigned
                Categories
                Chemistry
                Custom metadata
                Paginated Article

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