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      The many types of heterogeneity in replicative senescence

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          Abstract

          Replicative senescence, which is induced by telomere shortening, underlies the loss of regeneration capacity of organs and is ultimately detrimental to the organism. At the same time, it is required to protect organisms from unlimited cell proliferation that may arise from numerous stimuli or deregulations. One important feature of replicative senescence is its high level of heterogeneity and asynchrony, which promote genome instability and senescence escape. Characterizing this heterogeneity and investigating its sources are thus critical to understanding the robustness of replicative senescence. Here we review the different aspects of senescence driven by telomere attrition that are subject to variation in Saccharomyces cerevisiae , the current understanding of the molecular processes at play, and the consequences of heterogeneity in replicative senescence.

          Abstract

          Here, we review the different facets of replicative senescence triggered by telomere erosion that are subject to variation in Saccharomyces cerevisiae. We decompose the molecular pathways involved in the generation of heterogeneity and discuss the consequences, in particular, as a threat to replicative senescence robustness. Many concepts discussed here likely apply to other eukaryotic cells in which telomerase is repressed physiologically.

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          Most cited references92

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          Population genomics of domestic and wild yeasts

          Since the completion of the genome sequence of Saccharomyces cerevisiae in 19961,2, there has been an exponential increase in complete genome sequences accompanied by great advances in our understanding of genome evolution. Although little is known about the natural and life histories of yeasts in the wild, there are an increasing number of studies looking at ecological and geographic distributions3,4, population structure5-8, and sexual versus asexual reproduction9,10. Less well understood at the whole genome level are the evolutionary processes acting within populations and species leading to adaptation to different environments, phenotypic differences and reproductive isolation. Here we present one- to four-fold or more coverage of the genome sequences of over seventy isolates of the baker's yeast, S. cerevisiae, and its closest relative, S. paradoxus. We examine variation in gene content, SNPs, indels, copy numbers and transposable elements. We find that phenotypic variation broadly correlates with global genome-wide phylogenetic relationships. Interestingly, S. paradoxus populations are well delineated along geographic boundaries while the variation among worldwide S. cerevisiae isolates shows less differentiation and is comparable to a single S. paradoxus population. Rather than one or two domestication events leading to the extant baker's yeasts, the population structure of S. cerevisiae consists of a few well-defined geographically isolated lineages and many different mosaics of these lineages, supporting the idea that human influence provided the opportunity for cross-breeding and production of new combinations of pre-existing variation.
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            Telomere dysfunction induces metabolic and mitochondrial compromise.

            Telomere dysfunction activates p53-mediated cellular growth arrest, senescence and apoptosis to drive progressive atrophy and functional decline in high-turnover tissues. The broader adverse impact of telomere dysfunction across many tissues including more quiescent systems prompted transcriptomic network analyses to identify common mechanisms operative in haematopoietic stem cells, heart and liver. These unbiased studies revealed profound repression of peroxisome proliferator-activated receptor gamma, coactivator 1 alpha and beta (PGC-1α and PGC-1β, also known as Ppargc1a and Ppargc1b, respectively) and the downstream network in mice null for either telomerase reverse transcriptase (Tert) or telomerase RNA component (Terc) genes. Consistent with PGCs as master regulators of mitochondrial physiology and metabolism, telomere dysfunction is associated with impaired mitochondrial biogenesis and function, decreased gluconeogenesis, cardiomyopathy, and increased reactive oxygen species. In the setting of telomere dysfunction, enforced Tert or PGC-1α expression or germline deletion of p53 (also known as Trp53) substantially restores PGC network expression, mitochondrial respiration, cardiac function and gluconeogenesis. We demonstrate that telomere dysfunction activates p53 which in turn binds and represses PGC-1α and PGC-1β promoters, thereby forging a direct link between telomere and mitochondrial biology. We propose that this telomere-p53-PGC axis contributes to organ and metabolic failure and to diminishing organismal fitness in the setting of telomere dysfunction.
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              Telomere shortening and tumor formation by mouse cells lacking telomerase RNA.

              To examine the role of telomerase in normal and neoplastic growth, the telomerase RNA component (mTR) was deleted from the mouse germline. mTR-/- mice lacked detectable telomerase activity yet were viable for the six generations analyzed. Telomerase-deficient cells could be immortalized in culture, transformed by viral oncogenes, and generated tumors in nude mice following transformation. Telomeres were shown to shorten at a rate of 4.8+/-2.4 kb per mTR-/- generation. Cells from the fourth mTR-/- generation onward possessed chromosome ends lacking detectable telomere repeats, aneuploidy, and chromosomal abnormalities, including end-to-end fusions. These results indicate that telomerase is essential for telomere length maintenance but is not required for establishment of cell lines, oncogenic transformation, or tumor formation in mice.
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                Author and article information

                Contributors
                zhou.xu@sorbonne-universite.fr
                teresa.teixeira@ibpc.fr
                Journal
                Yeast
                Yeast
                10.1002/(ISSN)1097-0061
                YEA
                Yeast (Chichester, England)
                John Wiley and Sons Inc. (Hoboken )
                0749-503X
                1097-0061
                06 August 2019
                November 2019
                : 36
                : 11 ( doiID: 10.1002/yea.v36.11 )
                : 637-648
                Affiliations
                [ 1 ] CNRS, UMR7238, Institut de Biologie Paris‐Seine, Laboratory of Computational and Quantitative Biology Sorbonne Université Paris France
                [ 2 ] CNRS, UMR8226, Institut de Biologie Physico‐Chimique, Laboratory of Molecular and Cell Biology of Eukaryotes Sorbonne Université, PSL Research University Paris France
                Author notes
                [*] [* ] Correspondence

                Zhou Xu, CNRS, UMR7238, Institut de Biologie Paris‐Seine, Laboratory of Computational and Quantitative Biology, Sorbonne Université,Paris, France.

                Email: zhou.xu@ 123456sorbonne-universite.fr

                Maria Teresa Teixeira, CNRS, UMR8226, Institut de Biologie Physico‐Chimique, Laboratory of Molecular and Cell Biology of Eukaryotes, Sorbonne Université, PSL Research University, F‐75005, Paris, France.

                Email: teresa.teixeira@ 123456ibpc.fr

                Author information
                https://orcid.org/0000-0001-9468-1406
                https://orcid.org/0000-0002-9466-7951
                Article
                YEA3433 YEA-Mar-19-0019.R1
                10.1002/yea.3433
                6900063
                31306505
                74c8bda7-cc0e-45ab-9968-a3371622b2a5
                © 2019 The Authors Yeast Published by John Wiley & Sons Ltd.

                This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes.

                History
                : 19 March 2019
                : 04 July 2019
                : 07 July 2019
                Page count
                Figures: 3, Tables: 0, Pages: 12, Words: 5528
                Funding
                Funded by: Agence Nationale de la Recherche (ANR) , open-funder-registry 10.13039/501100001665;
                Award ID: ANR‐11‐LABX‐0011‐01
                Award ID: ANR‐16‐CE12‐0026
                Award ID: ANR‐17‐CE20‐0002‐01
                Funded by: Fondation pour la Recherche Médicale , open-funder-registry 10.13039/501100002915;
                Award ID: équipe labellisée
                Categories
                Yeast Extracts
                Yeast Extracts
                Custom metadata
                2.0
                November 2019
                Converter:WILEY_ML3GV2_TO_JATSPMC version:5.7.2 mode:remove_FC converted:05.12.2019

                Molecular biology
                dna damage checkpoint,heterogeneity,replicative senescence,telomerase,telomere
                Molecular biology
                dna damage checkpoint, heterogeneity, replicative senescence, telomerase, telomere

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