A novel intuitionistic fuzzy rough set model and its application to enhance umami peptide prediction

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Abstract

Datasets mainly consist of ambiguous objects, redundant and uncertain attribute values which increase complexity, time and cost in Knowledge Discovery in Databases (KDD) process. Rough set-based attribute reduction techniques deals with ambiguity but fails to handle uncertainty available in a real-valued dataset. Combining rough set with intuitionistic fuzzy set provides a great opportunity to the researchers working on attribute reduction of real-valued datasets as it provides better results when compared to the traditional fuzzy rough set theory. In this paper, we present a new intuitionistic fuzzy rough set model for attribute reduction to avoid misclassification and perturbation by handling hesitancy, ambiguity and uncertainty present in a dataset. We define an intuitionistic fuzzy tolerance relation between two objects along with lower and upper approximations based on that relation. Next, the concept of Degree of dependency is utilized to present attribute reduction by using model due to its better performing nature over other methods. The algorithm of the proposed technique is applied on benchmark datasets to perform a comparative study with recent approaches. We obtain the best result for the reduced Breast Cancer dataset by our proposed approach, with an accuracy of 98.96% along with 0.90 standard deviation by using SMO classifier. Finally, our proposed method is used to present a methodology to improve the prediction of umami peptides. Here, we record the best results with sensitivity, specificity, accuracy, AUC, and MCC of 96.8%, 93.6%, 97.7%, 0.988, and 0.899, respectively. From the experiments, it can be concluded that our method outperforms the existing methods.

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SMOTE: Synthetic Minority Over-sampling Technique

N. Chawla, K. W. Bowyer, L Hall … (2002)

An approach to the construction of classifiers from imbalanced datasets is described. A dataset is imbalanced if the classification categories are not approximately equally represented. Often real-world data sets are predominately composed of ``normal'' examples with only a small percentage of ``abnormal'' or ``interesting'' examples. It is also the case that the cost of misclassifying an abnormal (interesting) example as a normal example is often much higher than the cost of the reverse error. Under-sampling of the majority (normal) class has been proposed as a good means of increasing the sensitivity of a classifier to the minority class. This paper shows that a combination of our method of over-sampling the minority (abnormal) class and under-sampling the majority (normal) class can achieve better classifier performance (in ROC space) than only under-sampling the majority class. This paper also shows that a combination of our method of over-sampling the minority class and under-sampling the majority class can achieve better classifier performance (in ROC space) than varying the loss ratios in Ripper or class priors in Naive Bayes. Our method of over-sampling the minority class involves creating synthetic minority class examples. Experiments are performed using C4.5, Ripper and a Naive Bayes classifier. The method is evaluated using the area under the Receiver Operating Characteristic curve (AUC) and the ROC convex hull strategy.