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      Identification of novel anti-amoebic pharmacophores from kinase inhibitor chemotypes

      research-article
      1 , * , , 1 , 2 , 2 , 2 , 3 , 4 , 1 , 1 , 1 , 5 , 1 , 1 , 1 , 1 , 1 , 1 , 1 , 1 , 1 , 6 , 6 , 6 , 6 , 6 , 6 , 6 , 6 , 6 , 7 , 1 , 2 , 2 , 3 , 4 , * ,
      Frontiers in Microbiology
      Frontiers Media S.A.
      pathogenic free-living amoeba, Acanthamoeba species, Naegleria fowleri, Balamuthia mandrillaris, kinase inhibitors, cross-screening, hit-identification

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          Abstract

          Acanthamoeba species, Naegleria fowleri, and Balamuthia mandrillaris are opportunistic pathogens that cause a range of brain, skin, eye, and disseminated diseases in humans and animals. These pathogenic free-living amoebae (pFLA) are commonly misdiagnosed and have sub-optimal treatment regimens which contribute to the extremely high mortality rates (>90%) when they infect the central nervous system. To address the unmet medical need for effective therapeutics, we screened kinase inhibitor chemotypes against three pFLA using phenotypic drug assays involving CellTiter-Glo 2.0. Herein, we report the activity of the compounds against the trophozoite stage of each of the three amoebae, ranging from nanomolar to low micromolar potency. The most potent compounds that were identified from this screening effort were: 2d ( A. castellanii EC 50: 0.92 ± 0.3 μM; and N. fowleri EC 50: 0.43 ± 0.13 μM), 1c and 2b ( N. fowleri EC 50s: <0.63 μM, and 0.3 ± 0.21 μM), and 4b and 7b ( B. mandrillaris EC 50s: 1.0 ± 0.12 μM, and 1.4 ± 0.17 μM, respectively). With several of these pharmacophores already possessing blood–brain barrier (BBB) permeability properties, or are predicted to penetrate the BBB, these hits present novel starting points for optimization as future treatments for pFLA-caused diseases.

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          Most cited references42

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          Acanthamoeba spp. as agents of disease in humans.

          Acanthamoeba spp. are free-living amebae that inhabit a variety of air, soil, and water environments. However, these amebae can also act as opportunistic as well as nonopportunistic pathogens. They are the causative agents of granulomatous amebic encephalitis and amebic keratitis and have been associated with cutaneous lesions and sinusitis. Immuno compromised individuals, including AIDS patients, are particularly susceptible to infections with Acanthamoeba. The immune defense mechanisms that operate against Acanthamoeba have not been well characterized, but it has been proposed that both innate and acquired immunity play a role. The ameba's life cycle includes an active feeding trophozoite stage and a dormant cyst stage. Trophozoites feed on bacteria, yeast, and algae. However, both trophozoites and cysts can retain viable bacteria and may serve as reservoirs for bacteria with human pathogenic potential. Diagnosis of infection includes direct microscopy of wet mounts of cerebrospinal fluid or stained smears of cerebrospinal fluid sediment, light or electron microscopy of tissues, in vitro cultivation of Acanthamoeba, and histological assessment of frozen or paraffin-embedded sections of brain or cutaneous lesion biopsy material. Immunocytochemistry, chemifluorescent dye staining, PCR, and analysis of DNA sequence variation also have been employed for laboratory diagnosis. Treatment of Acanthamoeba infections has met with mixed results. However, chlorhexidine gluconate, alone or in combination with propamidene isethionate, is effective in some patients. Furthermore, effective treatment is complicated since patients may present with underlying disease and Acanthamoeba infection may not be recognized. Since an increase in the number of cases of Acanthamoeba infections has occurred worldwide, these protozoa have become increasingly important as agents of human disease.
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            Biology and pathogenesis of Acanthamoeba

            Acanthamoeba is a free-living protist pathogen, capable of causing a blinding keratitis and fatal granulomatous encephalitis. The factors that contribute to Acanthamoeba infections include parasite biology, genetic diversity, environmental spread and host susceptibility, and are highlighted together with potential therapeutic and preventative measures. The use of Acanthamoeba in the study of cellular differentiation mechanisms, motility and phagocytosis, bacterial pathogenesis and evolutionary processes makes it an attractive model organism. There is a significant emphasis on Acanthamoeba as a Trojan horse of other microbes including viral, bacterial, protists and yeast pathogens.
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              Naegleria fowleri: pathogenesis, diagnosis, and treatment options.

              Naegleria fowleri has generated tremendous media attention over the last 5 years due to several high-profile cases. Several of these cases were followed very closely by the general public. N. fowleri is a eukaryotic, free-living amoeba belonging to the phylum Percolozoa. Naegleria amoebae are ubiquitous in the environment, being found in soil and bodies of freshwater, and feed on bacteria found in those locations. While N. fowleri infection appears to be quite rare compared to other diseases, the clinical manifestations of primary amoebic meningoencephalitis are devastating and nearly always fatal. Due to the rarity of N. fowleri infections in humans, there are no clinical trials to date that assess the efficacy of one treatment regimen over another. Most of the information regarding medication efficacy is based on either case reports or in vitro studies. This review will discuss the pathogenesis, diagnosis, pharmacotherapy, and prevention of N. fowleri infections in humans, including a brief review of all survivor cases in North America.
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                Author and article information

                Contributors
                Journal
                Front Microbiol
                Front Microbiol
                Front. Microbiol.
                Frontiers in Microbiology
                Frontiers Media S.A.
                1664-302X
                10 May 2023
                2023
                : 14
                : 1149145
                Affiliations
                [1] 1Department of Chemistry and Chemical Biology, Northeastern University , Boston, MA, United States
                [2] 2Center for Tropical and Emerging Global Diseases, University of Georgia , Athens, GA, United States
                [3] 3Department of Pharmaceutical and Biomedical Sciences, College of Pharmacy, University of Georgia , Athens, GA, United States
                [4] 4Department of Comparative Pathobiology, College of Veterinary Medicine, Purdue University , West Lafayette, IN, United States
                [5] 5Clinical and Experimental Medicine PhD Program, University of Modena and Reggio Emilia , Modena, Italy
                [6] 6Instituto de Parasitología y Biomedicina “López-Neyra” Consejo Superior de Investigaciones Científicas (CSIC) , Granada, Spain
                [7] 7Department of Molecular and Cellular Biology, Kennesaw State University , Kennesaw, GA, United States
                Author notes

                Edited by: Nigel Yarlett, Pace University, United States

                Reviewed by: Binod Rayamajhee, University of New South Wales, Australia; Sutherland Kester Maciver, University of Edinburgh, United Kingdom; Samuel Arnold, University of Washington, United States; Wayne Heaselgrave, University of Wolverhampton, United Kingdom

                *Correspondence: Lori Ferrins, l.ferrins@ 123456northeastern.edu
                Christopher A. Rice, carice@ 123456purdue.edu

                Present address: Christopher A. Rice, Purdue Institute for Drug Discovery (PIDD), Purdue University, West Lafayette, IN, United States; Purdue Institute of Inflammation, Immunology and Infectious Disease (PI4D), Purdue University, West Lafayette, IN, United States

                This article was submitted to Infectious Agents and Disease, a section of the journal Frontiers in Microbiology

                Article
                10.3389/fmicb.2023.1149145
                10206040
                37234530
                788e888a-07be-46e0-b5c0-c5e1633ecb7d
                Copyright © 2023 Ferrins, Buskes, Kapteyn, Engels, Enos, Lu, Klug, Singh, Quotadamo, Bachovchin, Tear, Spaulding, Forbes, Bag, Rivers, LeBlanc, Burchfield, Armand, Diaz-Gonzalez, Ceballos-Perez, García-Hernández, Pérez-Moreno, Bosch-Navarrete, Ruiz-Pérez, Gamarro, González-Pacanowska, Navarro, Mensa-Wilmot, Pollastri, Kyle and Rice.

                This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

                History
                : 21 January 2023
                : 29 March 2023
                Page count
                Figures: 0, Tables: 3, Equations: 0, References: 48, Pages: 25, Words: 8034
                Funding
                Funded by: National Institute of Allergy and Infectious Diseases, doi 10.13039/100000060;
                Award ID: R01AI114685
                Award ID: 1R21AI127594
                Award ID: R01AI124046
                Award ID: R21AI126296
                Funded by: Spanish Ministerio de Economí a, Industria y Competitividad
                Award ID: SAF2015-71444-P
                Award ID: SAF2016-79957-R
                Funded by: Subdireccion General de Redes ´ y Centros de Investigacion Cooperativa-Red de Investigación Cooperativa en Enfermedades Tropicales
                Award ID: RD16/0027/0019
                Funded by: MCIN/AEI
                Award ID: PID2019-109623RB-I00
                Funded by: FEDER Una manera de hacer Europa
                Award ID: 2016-79957-R
                Funded by: MINCIU-FEDER
                Award ID: RTI2018-097210-B-I00
                Funded by: National Science Foundation, doi 10.13039/501100008982;
                Award ID: CHE-1262734
                Funded by: Georgia Research Alliance, doi 10.13039/100008065;
                Categories
                Microbiology
                Original Research

                Microbiology & Virology
                pathogenic free-living amoeba,acanthamoeba species,naegleria fowleri,balamuthia mandrillaris,kinase inhibitors,cross-screening,hit-identification

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