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      An extinct vertebrate preserved by its living hybridogenetic descendant

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      1 , 2 , 3 ,
      Scientific Reports
      Nature Publishing Group UK

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          Abstract

          Hybridogenesis is a special mode of hybrid reproduction where one parental genome is eliminated and the other is transmitted clonally. We propose that this mechanism can perpetuate the genome of extinct species, based on new genetic data from Pelophylax water frogs. We characterized the genetic makeup of Italian hybridogenetic hybrids ( P. kl. hispanicus and esculentus) and identified a new endemic lineage of Eastern-Mediterranean origin as one parental ancestor of P. kl. hispanicus. This taxon is nowadays extinct in the wild but its germline subsists through its hybridogenetic descendant, which can thus be considered as a “semi living fossil”. Such rare situation calls for realistic efforts of de-extinction through selective breeding without genetic engineering, and fuels the topical controversy of reviving long extinct species. “Ghost” species hidden by taxa of hybrid origin may be more frequent than suspected in vertebrate groups that experienced a strong history of hybridization and semi-sexual reproduction.

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          BEAST: Bayesian evolutionary analysis by sampling trees

          Background The evolutionary analysis of molecular sequence variation is a statistical enterprise. This is reflected in the increased use of probabilistic models for phylogenetic inference, multiple sequence alignment, and molecular population genetics. Here we present BEAST: a fast, flexible software architecture for Bayesian analysis of molecular sequences related by an evolutionary tree. A large number of popular stochastic models of sequence evolution are provided and tree-based models suitable for both within- and between-species sequence data are implemented. Results BEAST version 1.4.6 consists of 81000 lines of Java source code, 779 classes and 81 packages. It provides models for DNA and protein sequence evolution, highly parametric coalescent analysis, relaxed clock phylogenetics, non-contemporaneous sequence data, statistical alignment and a wide range of options for prior distributions. BEAST source code is object-oriented, modular in design and freely available at under the GNU LGPL license. Conclusion BEAST is a powerful and flexible evolutionary analysis package for molecular sequence variation. It also provides a resource for the further development of new models and statistical methods of evolutionary analysis.
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            Chronology, causes and progression of the Messinian salinity crisis

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              Genetic rescue of an endangered mammal by cross-species nuclear transfer using post-mortem somatic cells.

              Since the advent of procedures for cloning animals, conservation biologists have proposed using this technology to preserve endangered mammals. Here we report the successful cloning of a wild endangered animal, Ovis orientalis musimon, using oocytes collected from a closely related, domesticated species, Ovis aries. We injected enucleated sheep oocytes with granulosa cells collected from two female mouflons found dead in the pasture. Blastocyst-stage cloned embryos transferred into sheep foster mothers established two pregnancies, one of which produced an apparently normal mouflon. Our findings support the use of cloning for the expansion of critically endangered populations.
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                Author and article information

                Contributors
                c.dufresnes@sheffield.ac.uk
                Journal
                Sci Rep
                Sci Rep
                Scientific Reports
                Nature Publishing Group UK (London )
                2045-2322
                6 October 2017
                6 October 2017
                2017
                : 7
                : 12768
                Affiliations
                [1 ]ISNI 0000 0001 2165 4204, GRID grid.9851.5, Department of Ecology & Evolution, , University of Lausanne, Biophore Building, ; 1015 Lausanne, Switzerland
                [2 ]Hintermann & Weber SA, Rue de l’Eglise-Catholique 9b, 1820 Montreux, Switzerland
                [3 ]ISNI 0000 0004 1936 9262, GRID grid.11835.3e, Department of Animal & Plant Sciences, , University of Sheffield, Alfred Denny Building, Western Bank, ; Sheffield, S10 2TN United Kingdom
                Article
                12942
                10.1038/s41598-017-12942-y
                5630569
                28986535
                7bca4999-474a-4fa2-997d-0a883c5e44dd
                © The Author(s) 2017

                Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

                History
                : 28 June 2017
                : 20 September 2017
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