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      A new parrot taxon from the Yucatán Peninsula, Mexico—its position within genus Amazona based on morphology and molecular phylogeny

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          Abstract

          Parrots (Psittaciformes) are a diverse group of birds which need urgent protection. However, many taxa from this order have an unresolved status, which makes their conservation difficult. One species-rich parrot genus is Amazona, which is widely distributed in the New World. Here we describe a new Amazona form, which is endemic to the Yucatán Peninsula. This parrot is clearly separable from other Amazona species in eleven morphometric characters as well as call and behavior. The clear differences in these features imply that the parrot most likely represents a new species. In contrast to this, the phylogenetic tree based on mitochondrial markers shows that this parrot groups with strong support within A. albifrons from Central America, which would suggest that it is a subspecies of A. albifrons. However, taken together tree topology tests and morphometric analyses, we can conclude that the new parrot represents a recently evolving species, whose taxonomic status should be further confirmed. This lineage diverged from its closest relative about 120,000 years ago and was subjected to accelerated morphological and behavioral changes like some other representatives of the genus Amazona. Our phylogenies, which are so far the most comprehensive for Amazona taxa enabled us to consider the most feasible scenarios about parrot colonization of the Greater and Lesser Antilles and Central America from South America mainland. The molecular dating of these migrations and diversification rate were correlated with climatic and geological events in the last five million years, giving an interesting insight into Amazon parrot phylogeography and their evolution in general.

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          Most cited references75

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          A Pliocene-Pleistocene stack of 57 globally distributed benthic δ18O records

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            TREEFINDER: a powerful graphical analysis environment for molecular phylogenetics

            Background Most analysis programs for inferring molecular phylogenies are difficult to use, in particular for researchers with little programming experience. Results TREEFINDER is an easy-to-use integrative platform-independent analysis environment for molecular phylogenetics. In this paper the main features of TREEFINDER (version of April 2004) are described. TREEFINDER is written in ANSI C and Java and implements powerful statistical approaches for inferring gene tree and related analyzes. In addition, it provides a user-friendly graphical interface and a phylogenetic programming language. Conclusions TREEFINDER is a versatile framework for analyzing phylogenetic data across different platforms that is suited both for exploratory as well as advanced studies.
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              CONSEL: for assessing the confidence of phylogenetic tree selection

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                Author and article information

                Contributors
                Journal
                PeerJ
                PeerJ
                peerj
                peerj
                PeerJ
                PeerJ Inc. (San Francisco, USA )
                2167-8359
                27 June 2017
                2017
                : 5
                : e3475
                Affiliations
                [1 ]IFAS/TREC Advisory Committee, University of Florida , Miami, FL, United States of America
                [2 ]Laboratorio de Ornitología, Facultad de Ciencias Biológicas, Universidad Autónoma de Nuevo León , Nuevo León, Mexico
                [3 ]Department of Genetics, Wroclaw University of Environmental and Life Sciences , Wroclaw, Poland
                [4 ]Faculty of Biotechnology, University of Wrocław , Wrocław, Poland
                Article
                3475
                10.7717/peerj.3475
                5490482
                7f3e241a-966f-412a-8afe-e6dcb87e1742
                ©2017 Silva et al.

                This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited.

                History
                : 14 December 2016
                : 30 May 2017
                Funding
                Funded by: National Science Centre Poland (Narodowe Centrum Nauki, Polska)
                Award ID: 2015/17/B/NZ8/02402
                Funded by: Wroclaw Center of Biotechnology program
                Studies were supported by the National Science Centre Poland (Narodowe Centrum Nauki, Polska) grant no. 2015/17/B/NZ8/02402. Publication costs were supported by the Wroclaw Center of Biotechnology program “The Leading National Research Center (KNOW) for years 2014-2018”. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
                Categories
                Evolutionary Studies
                Taxonomy
                Zoology

                blue-winged amazon parrot,mitochondrial markers,phylogeography,phylogeny,psittaciformes,species

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